NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1067009

Scaffold Ga0209296_1067009


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1067009 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1813
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014837Metagenome / Metatranscriptome259Y
F016141Metagenome / Metatranscriptome249Y
F024095Metagenome / Metatranscriptome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_10670091F016141N/ADFSRYQVVRGQKYDFCRLQNGATTASSVSFFSNPIGAADPAAPTVFKTLEQTNLVKNASFGQEYFALTQIRTYANFIAQARQGTAVGTNFVYRGYTALLNSAMEQLQTLMSTGVLEIKFAQKLYYQIARPFVQCPPGFGIDVQSLASSRTGVAGPLETQLSDTNWLVRPDYRGSSVYNIDPIQIIEPEIQIQAALTFPGGNAPSFLNSALTTGDTQFTPAIELGLIFDGYVIRPSQ
Ga0209296_10670092F024095N/AMDNTNSLPFVYVVTASLGAAVGATASSTLIMQADSRFELMGIFGTGGTAANTEDSLTNPNSFTCTIRDQTTGRDLMSAPVPQRVLCGNAFRQFLEKRGIIFEPQSNLLFTFTNLTAATNSITLALHGYKIIL
Ga0209296_10670093F014837GGAGVGVPLATLFNAAFFRFPQDSIIHYVMVNSTLTCNGAFSQAIGVVAYGQGAQTIGENLNAGFPNFTDNVLWRDEVLNPIAGVISEGKSTQIILNEFFVHTDTGIGIYVNGINASININATIAFNPIAEWVNFREPTSGARV

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