NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1040256

Scaffold Ga0209296_1040256


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1040256 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2505
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000962Metagenome / Metatranscriptome820Y
F009264Metagenome / Metatranscriptome320N
F010397Metagenome / Metatranscriptome304Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_10402562F000962N/AMNIHVPEELKIKYPQYEFRGKQREINDRIVIEAYNPATEQTFFYSFEEDFFWIAGQIPDYKLQKVT
Ga0209296_10402563F009264GAGMDQEVDHLTKIGFGAKILDAYEMENGFVAVVVDWNSKTDSHKLKYASQGCITYSSDKIVGVDLEFQNYPYKDDDCEMYPIISVKLDYNDFNKKMDYVCFQNLKYQAVVYFAPQTWNCDRNSKKIKF
Ga0209296_10402565F010397N/AVYGLEALIRNDSFMNISEFERGKPVLTMHKINDLIKRIEEEKHKTEKLYKDRVQSLNTIHNLLISVKDSFKKGE

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