Scaffold Ga0209296_1034649

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1034649
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2750
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016365	Metagenome / Metatranscriptome	247	Y
F074452	Metagenome / Metatranscriptome	119	N
F080943	Metagenome / Metatranscriptome	114	N
F083781	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10346493	F016365	GAGG	MNALEKLILATAAIIYGMTAQLPANETIKETQEAINKWYNEVSTSVSKDITALGVTIENLPANISLGVSNFVDETVAYQKETWAETLKFEQEKQNWATIKGWFTPATEEVKK
Ga0209296_10346496	F083781	GGAGG	MKHINIEKFQKEAIDLAKTSNGNNPSFTGGSLYAEMIDADHAELLRADLEDFTNANWGDGDKNSPHGTAVKMYKLAEQNGRTEFVYDFVPGPGVVDDLPPEVDMMLCLEAEIARGK
Ga0209296_10346497	F080943	AGGAG	MITEATRERLRELEGQRITLEDELERLAYTNNFARIAHLEQELYDIKDSIKKITQNHWFEDISSEELQKESRILQ
Ga0209296_10346498	F074452	GAG	MPTKKNKINMTRLGIDPFTRAEILETQRAQDYWEMSYVDESNRVRYRMSRVLVEEEILDLLYCHGYITANQQASTINQTRRTDDNRGN