Scaffold Ga0209296_1015184

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1015184
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4499
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001713	Metagenome	648	Y
F002487	Metagenome / Metatranscriptome	554	Y
F059761	Metagenome	133	Y
F063703	Metagenome / Metatranscriptome	129	N
F081067	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_101518410	F081067	AGGA	MTRFTEKTIRTNGKWVKITRDNKERTFTFAIGYQGEFTAYQIEGTLSFKWVANWTEATERAMRLATN
Ga0209296_101518412	F063703	GGAGG	MNTEQLRRKARELYNNKEVPQEVNQYNQRKWIRSVLQLGDKWLLAKQVGRIQ
Ga0209296_101518413	F002487	AGTAGG	MITRQDAIKDLSHGHYCCYCTEPKTYGSCCGENHFVPFEDLYEEDKEAMIEEYLSEGNSN
Ga0209296_10151842	F059761	AGG	MTELLKAFGWRKRQANEVVDKIRNDAIEEVAKEIEKFDMFGKDTISSFTVVIRNMKVCPPCYGNCNQGRNCPAR
Ga0209296_10151843	F001713	AGGA	MKYEFDTTTGEGSVIVTVVMTYETDEEGTYNENIDEVWFEGRNVMGIFTEAQFRELEIEGCMRLSKHILEEADHAKIMAYESE