Basic Information | |
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Taxon OID | 3300027759 Open in IMG/M |
Scaffold ID | Ga0209296_1013704 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4781 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (75.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000808 | Metagenome / Metatranscriptome | 882 | Y |
F003393 | Metagenome / Metatranscriptome | 489 | Y |
F004431 | Metagenome / Metatranscriptome | 438 | Y |
F005348 | Metagenome / Metatranscriptome | 403 | Y |
F018352 | Metagenome / Metatranscriptome | 235 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209296_101370416 | F004431 | AGTAGG | MTITYSLWDGMQLLGVDFKASSADEMNTVVAELQKVSKNVVAHMRKVEVA |
Ga0209296_10137042 | F003393 | GAGG | MIDLENDDTIQIVDYVKVDILNAGQLEIDDCILVGDEVVSIVDIVSLRDGYTLELVNDFGEREIIEVGEYDQFDLMMLQ |
Ga0209296_10137044 | F000808 | AGGAG | MEYNYSLTTSYDGKLIHTLRVSDMLEAVNAWDKCVDYGTAKEYATYNLSDLTGKMYTKTFYANGEVVIK |
Ga0209296_10137045 | F018352 | AGGA | MGKFKDTLMEILAHDDCYGAGWQFTGNAIDYDVWACECNPYNIPADEIQEYHQLFKTKEN |
Ga0209296_10137048 | F005348 | AGG | MINSVMAFNCDECNGQGLIFWGNDLDYDVEKCDCNNFALGNLFTSGEAN |
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