Scaffold Ga0209296_1009972

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1009972
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5740
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000332	Metagenome / Metatranscriptome	1283	Y
F002933	Metagenome / Metatranscriptome	519	Y
F012428	Metagenome	280	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10099722	F012428	AGGAGG	MTMLQNRASPNIPQAPTQYDQAYMNSLSNVIRLFFNTINTVQQLNLAALNLDLRTLPTDADYDNLRLGDVYRDTQNGTLQSGTNILRIKVPIELSGVQGTGAVGSVGPVGGTITKNLTGVSGSGRVGTVTP
Ga0209296_10099727	F002933	GAG	MIPPLYKWYPMVQPGGEPNRTDALERRAEKLTEDYKQALKMKKLDIKIDDLAFELYVKKAQRNQLALEIFTNRKVDILA
Ga0209296_10099728	F000332	GGCGG	MRWLILLLLLGLVGATAKSGCHVREFYGIAYTVHDPTIRHKEMMAWLDKNAPYCKSTEYMVIWNNLAEWAGTADSTWLRNKVVHGYKDALEREKK