Scaffold Ga0209296_1005670

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1005670
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7946
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F003807	Metagenome	467	Y
F011761	Metagenome / Metatranscriptome	287	Y
F040626	Metagenome	161	Y
F058142	Metagenome / Metatranscriptome	135	Y
F058146	Metagenome	135	Y
F065543	Metagenome / Metatranscriptome	127	Y
F101171	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10056701	F065543	N/A	TQFTSVEDALAYMARTSAQQLGGNAQPVEQPKVQQSSGRVTTNDLHERFNELSQNLARKEQALREKELDSDIQRAMGDKFDTDLLDYALNKVKNNIQWNDDGTYAIVNQKGQERYGSDGMPLTIQGLVTEVAQGNPKLLRQSNSNSGSGLRPGQGSFTGALEETIPDYSRDPAAFNAWANKNGLGKGVGLKGLGVSASVSNSSRKVL
Ga0209296_100567012	F101171	GGAG	MDNIPAVANNKPLVNNAEFVKLTIYNEYGNTANNNVYTFSSSYQSETIDGDVYSPLGGLLAVGVQQRDIRVTSADTSISLSGIDGNNMSIVLGSLIRGSQLEITRGFYDNNYNLTSNAHRFTGIVTNYQISEERQDQDDNFTITLNASSFKTVLENRIAGRK
Ga0209296_10056702	F011761	AGGA	MAYVLGGPNNEGDGFTTAISNFALRAMHESNGLVNFTNVVAPTQGQTFLVPNFAPITYQDYNANGTGGTYGTGNAVVQNPALGQGTITATPAVAQTAFDIFYGWTTSFTLAATLGAELGESFAEKVDQRVTAAFLSFKVTPGNTYYATSADGFDRVLELGAMEVIGATNTSGTWTDGFTSNSILDCIRLVKQNFKVARMPGTPVIVMDSNGDAQTQGGYTGGQVGSSLNRLLAELTGGAVSQSGGSNLSALGNELLSTGKIESVYGCMIMFTTFLQSATRTVVGQASLPVLVGAYMGDSAIFTVMKEGLQLKTGEVPGGLQIWLTGVGYFGSGVGDLRRGGAINILQN
Ga0209296_10056703	F002260	AGGA	MSVPYQRISNATVVDIQFYDPAAERRAAALQVDWAPYFKVASQEWLYKLEFGWWQKYCDTVLGAYYYANLPNGQLISSFNPSLLIKNDQTLIRLDTFGAILVFYESLVTDVSNMNEVDMQNYDFAKMRCETEWTKALQLMNFYDLYMDNPQGPTTKLEENWTADVDYFNGDRRYF
Ga0209296_10056704	F058142	AGGAG	MAAVILNAPTVNTTQIIDVLKRDIPRTWSVPIYDDFPSDDEKVRYGIYVSDVHTNSRNPHQLAIQYCGAIYHAFDVFDVTYISYQDDPYNLDVNAIIANLVTALKDDGQQLMEGYFERNFNQVRTYGPTQAEKHVWTFELTRLEFNT
Ga0209296_10056706	F003807	N/A	MTQEQVWYKTSEEKLRSLIADEAKMMPMLDNMMATIKQLKAKQAFRLALLNQLLEELNEN
Ga0209296_10056707	F058146	AGGA	MKLSQLTAKPQLIDIHIDDEDTIKEFGEAIEFWTWDRQPMDVFMKLASASGQDTSGIISVVRTLILDEKGKEILKDDAMLPTHVLMKAIAKVTELLGK
Ga0209296_10056708	F040626	N/A	MALILTIDGLGKRYGMLPSEVLCRSNTFDLYIMDASLTFENYHHKKQMNNGREPIPDFTTDELQAMLEKNKEQ