Scaffold Ga0209296_1005113

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1005113
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8447
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000506	Metagenome / Metatranscriptome	1070	Y
F003153	Metagenome / Metatranscriptome	504	Y
F007522	Metagenome / Metatranscriptome	349	Y
F015702	Metagenome	252	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100511314	F003153	AGGAG	MPVDVTGVKQLQKAMKHVEPALNKQMSKDIKAVMLTVRDKARGYLPAQNDVLSGWGKGTASAETINYRAFPAYDYALAKSKVAYSAGQNKRNKSGYRAAFYVYNNSAPGAIFETAGRINKPKGKGSLNPNAPEQFNSAAEMLTSMKGYGKQRGRVIFRAWDETKNKVIPTVVKAINTVATDFNNKTQINKAA
Ga0209296_100511315	F000506	AGGAG	MAKLKITRANGEVSEHKITPGVEYAFELKYGAGISKVLRDHERQTEIYFLAHECLRRANVTVPVFGLDFIETLDTVEVLDEEKK
Ga0209296_10051132	F007522	GAGG	MTLQEAGLLWVAIMVASIWAYGVLQNAKQTHYWRGRKDGFDMHRRMIQNKTDADIN
Ga0209296_10051133	F015702	AGG	MLKEIELYYTVNTLVKLAKDQWGDNAPEYLAGALESVITYKQMKTLIDHLKSEVKI