Scaffold Ga0209296

Basic Information
Taxon OID	3300027759 Open in IMG/M
Scaffold ID	Ga0209296_1004985 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027759 Open in IMG/M

Scaffold ID

Ga0209296_1004985 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8582
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (4.55%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8582

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (4.55%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F009264	Metagenome / Metatranscriptome	320	N
F009402	Metagenome	318	Y
F018368	Metagenome / Metatranscriptome	235	N
F027178	Metagenome	195	Y
F045700	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100498512	F027178	N/A	MKESNMQKYVVMIKDGSKWQEYARLKDKILAETVLKLVIKDFPAKIIELK
Ga0209296_100498516	F009264	N/A	MRAYLEFSLMDQEVDHLIKIGFGAKILDAYEMENGFVAVVVDWNSKTDSHKLKYASQGCITYSSDKIVGVDLEFQNYPYKDDDCEMYPIISVKLDYDNSNKKMDYVCFQNLKYQAIVYFAPYDWNTTRNSKKIKF
Ga0209296_100498518	F000962	N/A	MNIHVPEGLKIKYPQYEFRGKQREINDRIVIEAYNPVTEQTFYYSFEEDFFWIAGQIPDYKLQKV
Ga0209296_100498519	F045700	N/A	MSNILKHAEKELQCFECETGTYKDITVNYFSQLSLDRSCVTEDVTIQRCDTCGTEILDSKASKMIESNIERNFPGYYDKWKTKNKSRL
Ga0209296_10049854	F018368	N/A	MTITTLTTRGQKISNQIVSADVIEINQGPFSFTALTESIITEEDKIVIKYEVDGEMCNHEISNDMLNNAHVEDGHIVFAWGTQLSISLYKLAVMNAVE
Ga0209296_10049857	F009402	N/A	MKKLDEQFESAGFKYKQIHREDLFAIYERKYINTTKDSHYEAIKIQSHNGMEIAGNKIPPSEYYPSSNSWGRHGYTCITKKDAYIRLDKMMKEDAINKEAANKKAERKNAK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209296_1004985

Overview

Ecosystem & Geography

Associated Families

Sequences