Basic Information | |
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Taxon OID | 3300027759 Open in IMG/M |
Scaffold ID | Ga0209296_1004219 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9515 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (66.67%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000332 | Metagenome / Metatranscriptome | 1283 | Y |
F001538 | Metagenome / Metatranscriptome | 674 | Y |
F012435 | Metagenome / Metatranscriptome | 280 | Y |
F065786 | Metagenome | 127 | Y |
F073255 | Metagenome | 120 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209296_100421910 | F000332 | N/A | MRWLILLLLLGLVGAVAKNGCHVREFYGIAYTIHDPTQRHKEMMAWLDQNAGHCKSTDYTVIWNNLAEWAGSADSTFLRAKVVHGYKDALEREKK |
Ga0209296_100421911 | F012435 | N/A | MAEIDLVKYGVLWQKVESMEAKIDKMEAQLDTLIELANKGRGGFWMGMALVSGVSSIFGYISHYWSK |
Ga0209296_10042195 | F065786 | N/A | MTKDDLVNLLRITGAQETAIDVVCAAYDAGWNDALDDYSKRIVVLPFGKDTIDSFGSFIKEAKK |
Ga0209296_10042198 | F073255 | GGA | MYDQKTDTQTSKASVNGHQGQANLVGYADGQLHPVHLCFGYGHQLYAWPLGQRSGQRRNLQNDFTRFFYTYRRHDWIPEWYQTHAE |
Ga0209296_10042199 | F001538 | GAG | MIDTIKLFPTVQPSGYPDKHDLVQKKLERQHEMNKANELAKQQQTQLQDIGFEIYCKRSVQERLRMEIFLNRKLDIYV |
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