NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1004219

Scaffold Ga0209296_1004219


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1004219 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9515
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000332Metagenome / Metatranscriptome1283Y
F001538Metagenome / Metatranscriptome674Y
F012435Metagenome / Metatranscriptome280Y
F065786Metagenome127Y
F073255Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100421910F000332N/AMRWLILLLLLGLVGAVAKNGCHVREFYGIAYTIHDPTQRHKEMMAWLDQNAGHCKSTDYTVIWNNLAEWAGSADSTFLRAKVVHGYKDALEREKK
Ga0209296_100421911F012435N/AMAEIDLVKYGVLWQKVESMEAKIDKMEAQLDTLIELANKGRGGFWMGMALVSGVSSIFGYISHYWSK
Ga0209296_10042195F065786N/AMTKDDLVNLLRITGAQETAIDVVCAAYDAGWNDALDDYSKRIVVLPFGKDTIDSFGSFIKEAKK
Ga0209296_10042198F073255GGAMYDQKTDTQTSKASVNGHQGQANLVGYADGQLHPVHLCFGYGHQLYAWPLGQRSGQRRNLQNDFTRFFYTYRRHDWIPEWYQTHAE
Ga0209296_10042199F001538GAGMIDTIKLFPTVQPSGYPDKHDLVQKKLERQHEMNKANELAKQQQTQLQDIGFEIYCKRSVQERLRMEIFLNRKLDIYV

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