NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209296_1003197

Scaffold Ga0209296_1003197


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1003197 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11229
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (65.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003067Metagenome / Metatranscriptome509Y
F004430Metagenome / Metatranscriptome438Y
F030434Metagenome185N
F085231Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100319711F004430AGGMATGAEVLSLLIPKGGWYISGDDFEGIQFLECDPITKAEFQAGFAKYDAWQAAKDAQIAKDKAALLAKLGITADEAALLLA
Ga0209296_100319714F085231AGGAGMKEQLMAAGLSYLRHAATCAAALYMSGITDPKILANAFLAGLLGPLMRALNSSDKTYGVK
Ga0209296_100319715F003067N/AMTTAQSLITMAIAVATLLGCAAGLVRHLVKYYLSELKVDGNGGHNLVGRVERIEQRVDSIYELLVRSKPE
Ga0209296_100319719F030434AGGMQANLVIVPTPLPAVVLDYSQEVQAHASGFARSTGVVANRPDHAGRYNNKLNYHEFVTENSEAAGSEIAVAQYMGIKNFIPTVDTFTEQADVTIGNLGFEVKWTRYINGHLIIHQDYMRLQDVAILVVGKSPVYQLAGWMPVLWAKKAKYYNAADGNFWVSQRELFEMNTLRKSVYGIIE

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.