Basic Information | |
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Taxon OID | 3300027759 Open in IMG/M |
Scaffold ID | Ga0209296_1003197 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11229 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (65.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003067 | Metagenome / Metatranscriptome | 509 | Y |
F004430 | Metagenome / Metatranscriptome | 438 | Y |
F030434 | Metagenome | 185 | N |
F085231 | Metagenome | 111 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209296_100319711 | F004430 | AGG | MATGAEVLSLLIPKGGWYISGDDFEGIQFLECDPITKAEFQAGFAKYDAWQAAKDAQIAKDKAALLAKLGITADEAALLLA |
Ga0209296_100319714 | F085231 | AGGAG | MKEQLMAAGLSYLRHAATCAAALYMSGITDPKILANAFLAGLLGPLMRALNSSDKTYGVK |
Ga0209296_100319715 | F003067 | N/A | MTTAQSLITMAIAVATLLGCAAGLVRHLVKYYLSELKVDGNGGHNLVGRVERIEQRVDSIYELLVRSKPE |
Ga0209296_100319719 | F030434 | AGG | MQANLVIVPTPLPAVVLDYSQEVQAHASGFARSTGVVANRPDHAGRYNNKLNYHEFVTENSEAAGSEIAVAQYMGIKNFIPTVDTFTEQADVTIGNLGFEVKWTRYINGHLIIHQDYMRLQDVAILVVGKSPVYQLAGWMPVLWAKKAKYYNAADGNFWVSQRELFEMNTLRKSVYGIIE |
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