Scaffold Ga0209296_1003197

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1003197
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11229
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (65.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003067	Metagenome / Metatranscriptome	509	Y
F004430	Metagenome / Metatranscriptome	438	Y
F030434	Metagenome	185	N
F085231	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100319711	F004430	AGG	MATGAEVLSLLIPKGGWYISGDDFEGIQFLECDPITKAEFQAGFAKYDAWQAAKDAQIAKDKAALLAKLGITADEAALLLA
Ga0209296_100319714	F085231	AGGAG	MKEQLMAAGLSYLRHAATCAAALYMSGITDPKILANAFLAGLLGPLMRALNSSDKTYGVK
Ga0209296_100319715	F003067	N/A	MTTAQSLITMAIAVATLLGCAAGLVRHLVKYYLSELKVDGNGGHNLVGRVERIEQRVDSIYELLVRSKPE
Ga0209296_100319719	F030434	AGG	MQANLVIVPTPLPAVVLDYSQEVQAHASGFARSTGVVANRPDHAGRYNNKLNYHEFVTENSEAAGSEIAVAQYMGIKNFIPTVDTFTEQADVTIGNLGFEVKWTRYINGHLIIHQDYMRLQDVAILVVGKSPVYQLAGWMPVLWAKKAKYYNAADGNFWVSQRELFEMNTLRKSVYGIIE