NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1002842

Scaffold Ga0209296_1002842


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1002842 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12093
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (44.74%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004546Metagenome / Metatranscriptome433Y
F042896Metagenome / Metatranscriptome157Y
F104427Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_10028422F042896GGAGMTQTVYVRFSYEDRVSEEVPIHTSMDLTKNSNRKKLLNRLIKQNQNITEVTLP
Ga0209296_100284220F104427GGAGMNNEDLQSFIEAFDDFMKHFEVEELYYEGRKVYENHRTEAKMIQEQEIEALASKYEVTCDYIIQEFIL
Ga0209296_100284233F004546GGGGGMPKEEEFPFDQFPWKLVQKEGKDNKDIRKCYFQTEEHRNKHIARYNLKKKDYTISYKYE

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