NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1002239

Scaffold Ga0209296_1002239


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1002239 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14046
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002260Metagenome / Metatranscriptome577Y
F003807Metagenome467Y
F041183Metagenome / Metatranscriptome160Y
F058142Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_10022391F041183N/APAVAQTAFDIFFGWTTSFTLAATLGAELGESFAEKVDQRVTLAFQSFKVSPGNTYYATSADGFTRVLELGAMELAESGTNVTVAAGGTTGFSAASVLDLVRLVKQNFKVARMPGTPVIVLDSNGDAEGSVAGQTGSSLNRLLAELTGGAVSQSGGSNLSALGNELLATGKIESVYGCMIVFTTFLTTASRTFLGSGPFSVLVGGYMGDSAIFTVMKEGLQLKTGEVPGGLQIWLTGVGYFGSGVGDLRRGGAINIQQ
Ga0209296_10022392F002260AGGAMSVPYQRISNATVEDIQFYDPAAERRAAALNVDWAPYFKVGSQEWLYKLEFGWWQKYCDTVLGAYYYSNLPNGQLISSFNPSLLIKSDQTLIRLDTFGAILVFYESLVTDVSNMNEVDVQNYEFAKKRCEDEWTKALQLMNFYDLYMDSPQGPTTKLEENWTADVDYFNGDRRYF
Ga0209296_10022393F058142AGGAGMAEVNYSVLNEPTVTETQISAVLRRDIPKAWNIPIYSDFPSDSEVVRYGIYVSDVHTVSRNPHQLAIQYCGAIYHAYDEFGVTYISYQDDPYNTAVNAIIGNLVTAVKDDGVQLMDGYFERDFDQVRTYGPTQAEKHTWTFRMLRMEFNT
Ga0209296_10022395F003807N/AMNNNDDVWLKTTEQKLRSLIADEAKAMPMLDAMQATIKQLKAKQAFRLALLNQLLEEALDKE
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