NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1001997

Scaffold Ga0209296_1001997


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1001997 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14983
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (76.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004670Metagenome428Y
F005027Metagenome / Metatranscriptome414Y
F005562Metagenome / Metatranscriptome396Y
F034929Metagenome173N
F084244Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100199710F004670AGGAMSRMKDYLLEDLPLFRASDPETSRQISPLRVGTHRAILLQQYFYATLGLTDEEAGMRAALDGHDIKGYWKRCSDLRTIGLIEDLGIRRALTSGSQGIVCGITQTGIDMVKGWA
Ga0209296_100199713F005562GGAMTRPNIQIDDEVREMTEAEYEALLATGWTLEGTDETPTAG
Ga0209296_100199717F084244GGAMTVDLGMEFSGLKDALKELNDIDKKLRRQVTKDFKTIVQPVVGKAESMLPSGAPLSGMARSWQGKSGADIMSWQDARVRKNIKPFTSGKKVREAPSGFRQNLAVFGIKWLGPQATLFDLASKGTIGDNLTARYGSPSRIIYRSYEMMKDDVDRQIKELVNRVMKLTGNQGRI
Ga0209296_10019978F005027AGGMETSTGELIAKLTNISMNLALELRFKEASVIMEAVGALHALPNIAETIRDSWHPSMATSGPSKGISYLSDARLVASDE
Ga0209296_10019979F034929GAGGMLPTWGYIALRSKDKKIMVQVFTDLTTGLIEYTQVCTRAESWHLWGPPTEVERVD
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Institute for Fundamental Biomedical Research
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