NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1001848

Scaffold Ga0209296_1001848


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1001848 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15564
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (66.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004670Metagenome428Y
F005027Metagenome / Metatranscriptome414Y
F034929Metagenome173N
F064500Metagenome128Y
F071244Metagenome122Y
F084244Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100184816F084244GGAMATNVVEVLGLKEALKELNTMDKKLRREITRDFKKIIQPVVGKAESMLPNNAPLSGMARSWQGKSGADIMSWNDARVRRNLKPFTSGKKVRDAPGGFKQNLGVFGIRWLGPQATALDMLAKGVMADNLTNRFGPPSRIIYKAYESASEEVQQQVKDLVNKVMKLTNNAMRI
Ga0209296_100184819F071244AGGMYTIISPRIGTPGDKFEPSEETNVEALIEGGFIKSDKPSTKSAKTEETSPEE
Ga0209296_10018484F064500GGTGGVSEYIHQDDAYAWLRDKEITFAEDDFAKVQAERDALKLRVAELETELNRLEREHARGQF
Ga0209296_10018486F005027AGGMETSTGELIAKLTNISMNLALELRFKEASVIMEAVGALHALPNIAETIRDSWHPSLNVSGPSKGINYLSSVKMVGADE
Ga0209296_10018487F034929N/AMGQLLAVSQNDGKPTMIPTWGYMALRSKDKKTMVQIFTDLSTGLIEYTQVCTRAESWHLWGPPTEVERVD
Ga0209296_10018488F004670N/AMKDYLLEDLPLFRATDPDTSRQIKPMRLNSHRAILLAIYAGNISGLTDEEAAAIAVSRGHVINGYWKRCADLRTQGLIHDLGIRRTLASGSQGMVCAVTRFGLDIATGCYD
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