Basic Information | |
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Taxon OID | 3300027759 Open in IMG/M |
Scaffold ID | Ga0209296_1001728 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 16298 |
Total Scaffold Genes | 29 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (58.62%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006587 | Metagenome | 369 | Y |
F010016 | Metagenome | 309 | Y |
F012016 | Metagenome | 284 | Y |
F014840 | Metagenome | 259 | Y |
F034908 | Metagenome | 173 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209296_100172811 | F010016 | N/A | MKKTARNDITGDFIHSKPSSDMFEKNFDLIFRKKKPEETEYELNKSTGEVQKKAE |
Ga0209296_100172820 | F014840 | AGGTGG | MIPFSYAVVDDEGEVIRQYRWSVKEAKWFTDNNPHAKVIRLEKVKQVKEDLFKLVGECLF |
Ga0209296_100172822 | F006587 | AGGAG | MNDKYEGTGYSIVGFIIGCCLMWAVMQYAHTQKKYSMNLKCVQGELYEEIRPNFYVKSHLECFEQRTL |
Ga0209296_100172823 | F012016 | AGG | MQTTLKQPFAWAIEEFNSDGELVWSSIMQTRPVELSWIRDLPTKKHNIVITPLYKDEANAEKITGIKSYRESTQRLADAFNGL |
Ga0209296_100172829 | F034908 | N/A | SMEETKYEEVKKWGVEPSDHIATIISEPLREKGMVVKAYATEVDHSLYDRQKKHADHLVQADAYNDIENEIIARACIGGVCED |
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