NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1001728

Scaffold Ga0209296_1001728


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1001728 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16298
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (58.62%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006587Metagenome369Y
F010016Metagenome309Y
F012016Metagenome284Y
F014840Metagenome259Y
F034908Metagenome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100172811F010016N/AMKKTARNDITGDFIHSKPSSDMFEKNFDLIFRKKKPEETEYELNKSTGEVQKKAE
Ga0209296_100172820F014840AGGTGGMIPFSYAVVDDEGEVIRQYRWSVKEAKWFTDNNPHAKVIRLEKVKQVKEDLFKLVGECLF
Ga0209296_100172822F006587AGGAGMNDKYEGTGYSIVGFIIGCCLMWAVMQYAHTQKKYSMNLKCVQGELYEEIRPNFYVKSHLECFEQRTL
Ga0209296_100172823F012016AGGMQTTLKQPFAWAIEEFNSDGELVWSSIMQTRPVELSWIRDLPTKKHNIVITPLYKDEANAEKITGIKSYRESTQRLADAFNGL
Ga0209296_100172829F034908N/ASMEETKYEEVKKWGVEPSDHIATIISEPLREKGMVVKAYATEVDHSLYDRQKKHADHLVQADAYNDIENEIIARACIGGVCED

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