NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1001118

Scaffold Ga0209296_1001118


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1001118 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21466
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (86.21%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025745Metagenome / Metatranscriptome200N
F028173Metagenome / Metatranscriptome192Y
F045100Metagenome / Metatranscriptome153Y
F048311Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100111811F048311AGGGGGMNENTELNINLVIASLREQIGLLALDKAMLTARLQELENKESTTN
Ga0209296_100111813F025745N/AMPANAPTLTVAFGLNGSYTNVSADLILSVDIRRGRMYQDVFIDAGTATVVLNNQSGAFDPSNTSSPWYNTLIAGMQVRISGNSTVIYTGYLEDNMVNQGIYPTVSLTFVDGLATFGKTIAPALATSAYSETAASRAARVLDIAQWPAGARSLTGTTVMKKTGQGISCLDMLEQCANVVGGRFYVSRTGVATLVPLADKFSRPTQLLFSDQGDAYSVGYDGIITNPGTDYVYNQAIVDRGPGVLQYTSTYGASVTTYGLKSKKLDAPSNTSTAATNLSLYAARKDADAAVLVEQLDFTPIGIGALATDFLETELNDLVTVKRITYDGRSISINCVVEGMAHSITSDNWRVSYFTSLIDPYTISL
Ga0209296_100111815F028173GAGMADEVVILNGVKETLTALKDFDKDAVKRFNKVINSELSGAERDAKGLISEDPPMSGWRKADATKGRTRGGAGWPGWNAAEIQSKITKTKAKGKVRGDYTTSAGALLNKSAAGSIFEVAGRKTKSGTGGGSSAQFLRTLGNRFGAASRVVWRVVDKDKARIQQNVAKALEEAKAELQKHLNRERV
Ga0209296_100111819F045100GGAMSYTITSDNFEGKAKGDSITEKELLESGLNIEALIAGEHLKDAKASIKLATVEETK

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