Basic Information | |
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Taxon OID | 3300027759 Open in IMG/M |
Scaffold ID | Ga0209296_1001118 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 21466 |
Total Scaffold Genes | 29 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (86.21%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F025745 | Metagenome / Metatranscriptome | 200 | N |
F028173 | Metagenome / Metatranscriptome | 192 | Y |
F045100 | Metagenome / Metatranscriptome | 153 | Y |
F048311 | Metagenome / Metatranscriptome | 148 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209296_100111811 | F048311 | AGGGGG | MNENTELNINLVIASLREQIGLLALDKAMLTARLQELENKESTTN |
Ga0209296_100111813 | F025745 | N/A | MPANAPTLTVAFGLNGSYTNVSADLILSVDIRRGRMYQDVFIDAGTATVVLNNQSGAFDPSNTSSPWYNTLIAGMQVRISGNSTVIYTGYLEDNMVNQGIYPTVSLTFVDGLATFGKTIAPALATSAYSETAASRAARVLDIAQWPAGARSLTGTTVMKKTGQGISCLDMLEQCANVVGGRFYVSRTGVATLVPLADKFSRPTQLLFSDQGDAYSVGYDGIITNPGTDYVYNQAIVDRGPGVLQYTSTYGASVTTYGLKSKKLDAPSNTSTAATNLSLYAARKDADAAVLVEQLDFTPIGIGALATDFLETELNDLVTVKRITYDGRSISINCVVEGMAHSITSDNWRVSYFTSLIDPYTISL |
Ga0209296_100111815 | F028173 | GAG | MADEVVILNGVKETLTALKDFDKDAVKRFNKVINSELSGAERDAKGLISEDPPMSGWRKADATKGRTRGGAGWPGWNAAEIQSKITKTKAKGKVRGDYTTSAGALLNKSAAGSIFEVAGRKTKSGTGGGSSAQFLRTLGNRFGAASRVVWRVVDKDKARIQQNVAKALEEAKAELQKHLNRERV |
Ga0209296_100111819 | F045100 | GGA | MSYTITSDNFEGKAKGDSITEKELLESGLNIEALIAGEHLKDAKASIKLATVEETK |
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