Scaffold Ga0209296

Basic Information
Taxon OID	3300027759 Open in IMG/M
Scaffold ID	Ga0209296_1001118 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027759 Open in IMG/M

Scaffold ID

Ga0209296_1001118 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21466
Total Scaffold Genes	29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (86.21%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

21466

Total Scaffold Genes

29 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (86.21%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025745	Metagenome / Metatranscriptome	200	N
F028173	Metagenome / Metatranscriptome	192	Y
F045100	Metagenome / Metatranscriptome	153	Y
F048311	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100111811	F048311	AGGGGG	MNENTELNINLVIASLREQIGLLALDKAMLTARLQELENKESTTN
Ga0209296_100111813	F025745	N/A	MPANAPTLTVAFGLNGSYTNVSADLILSVDIRRGRMYQDVFIDAGTATVVLNNQSGAFDPSNTSSPWYNTLIAGMQVRISGNSTVIYTGYLEDNMVNQGIYPTVSLTFVDGLATFGKTIAPALATSAYSETAASRAARVLDIAQWPAGARSLTGTTVMKKTGQGISCLDMLEQCANVVGGRFYVSRTGVATLVPLADKFSRPTQLLFSDQGDAYSVGYDGIITNPGTDYVYNQAIVDRGPGVLQYTSTYGASVTTYGLKSKKLDAPSNTSTAATNLSLYAARKDADAAVLVEQLDFTPIGIGALATDFLETELNDLVTVKRITYDGRSISINCVVEGMAHSITSDNWRVSYFTSLIDPYTISL
Ga0209296_100111815	F028173	GAG	MADEVVILNGVKETLTALKDFDKDAVKRFNKVINSELSGAERDAKGLISEDPPMSGWRKADATKGRTRGGAGWPGWNAAEIQSKITKTKAKGKVRGDYTTSAGALLNKSAAGSIFEVAGRKTKSGTGGGSSAQFLRTLGNRFGAASRVVWRVVDKDKARIQQNVAKALEEAKAELQKHLNRERV
Ga0209296_100111819	F045100	GGA	MSYTITSDNFEGKAKGDSITEKELLESGLNIEALIAGEHLKDAKASIKLATVEETK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209296_1001118

Overview

Ecosystem & Geography

Associated Families

Sequences