Scaffold Ga0209296

Basic Information
Taxon OID	3300027759 Open in IMG/M
Scaffold ID	Ga0209296_1000886 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027759 Open in IMG/M

Scaffold ID

Ga0209296_1000886 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24608
Total Scaffold Genes	50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	44 (88.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

24608

Total Scaffold Genes

50 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

44 (88.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013252	Metagenome	273	Y
F015062	Metagenome	257	Y
F016247	Metagenome	248	Y
F017424	Metagenome / Metatranscriptome	241	Y
F018653	Metagenome	234	Y
F051683	Metagenome	143	Y
F055446	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100088611	F055446	GAG	MVKKKKNYNYYKLNVGFFPDVVKLCFDDKVFQQILKDHDVTLKANALDCGIAETHLIGDGKDAIIILVFDMSLVNDNLGELVDTIAHEVSHAVDHLAEHIGEEDNFVHETRAYLSGHLAGQIFKICMHEKEKYARKANRKIPNKTSKRDGGADVQVDQLSVGSAGPNSVSEQSVSLSGTQDANRSTVTQTNPSV
Ga0209296_100088625	F018653	GAG	VSQYRYILIDEFGGACRKFASKLEAQPYLTAGMRLEALPKTPKQNPYIIASLQLPEALL
Ga0209296_10008864	F051683	GAG	MILELEDDFTDDITVVNLAESYVSVSKMLKDGDSWHEDDVASWKELLPAIKLVGGWYSVDFDKEIKKAKKKK
Ga0209296_100088646	F013252	GAG	MADNNLQGFRQTYQETGKLSSGGGPEDKKLDAGPSGSKRPNNAVKGKPARSSKVGPGKNLKDIGGGNFY
Ga0209296_100088647	F017424	N/A	MRDFISEIITRTRDEQTKLADTLTAGNNVNTFEDYQRLVGRYEGFKQTLDIINEILREDEEDL
Ga0209296_10008867	F016247	AGGA	MSTFIVEHRIKGNYVMETIAGVEDIDMSMYKDLIGVWVCESVEETRAMEKELQEMRHARSSQPS
Ga0209296_10008868	F015062	N/A	MKLKTKTKHKVCAVAPRLSDEDIDPIEQDDMDTVSSQIVEGWLPWDPEDIIDIKRLINEKMPQKQQFVVEAFLDGLNYVDVGVTEKYWRYHFSKGVEFIKKELQL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209296_1000886

Overview

Ecosystem & Geography

Associated Families

Sequences