Scaffold Ga0209296_1000677

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1000677
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28930
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (65.96%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F003807	Metagenome	467	Y
F011761	Metagenome / Metatranscriptome	287	Y
F020635	Metagenome	223	Y
F026558	Metagenome	197	Y
F028717	Metagenome / Metatranscriptome	190	Y
F040626	Metagenome	161	Y
F042895	Metagenome	157	Y
F058142	Metagenome / Metatranscriptome	135	Y
F058146	Metagenome	135	Y
F079592	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10006772	F020635	N/A	MEFTLKQLSWIVIGSLGLGGTGYMTMNTKIDELAVKVAVVHNQMDNQNKMLERIENKLNTIQGK
Ga0209296_100067724	F079592	N/A	MIEYTYKLYRDDDEQLVVTVDPLVKDIEVSIEAMMNMNVDDLSDDNKQIFEMKILGLRTIHQFLGALQQENYLKEYKQGLTTELKGKINIDVNERLDGLTQESIVH
Ga0209296_100067725	F042895	N/A	MATFQGLIDKPFYVGHIKNFDKMVTELSPYMNEIEIDQCISFMHTLTATKNDINPSPEDCKTQLQIMFGRDRFLELTQQWGKKNQKFLSVFGALKYKDKRDGKLYDGLDETDNVEDYEKIYI
Ga0209296_100067733	F026558	GAG	MYNNRDLLKRNVVYDNIYLQMLSYQYAYLGGITFKQAVRKKRPSEDSTLYLDLVANTVAQPICRYIVDTINDVLFEPGIKRNLQFCTPQGKHIAPENNEWIDLFQLDSDLTNRSMNGFMEGVGDLTSIFGHCWVAVDMPQATEGNLGRPYVCAISPLDVWDWEFDYYGGRPLLKYVKIKEMEETDCYYIKCYHLGDATTPSRWESYEVQKGPGKENQPAEKIGEGTYPPGMSVPVFIAYGRRDPRTMECGVSDIDSASDAQKEYYKLECEKYTALQFAHTIIRADKGISVPVHAGAIVRANEGQIEAIAIDTGDVDAIIKAQDNILEQIEALTGLGGLRTSKNQIASGVAIIEERKQLHRTAKAKARLMEVTEEMIYTYAARFMDQRWAGEVHYNTDYEAHDTNYRMALIKSANELAGENEIVKSLITKEIIALLSPAEDIPEYEQVYINTITSSELKTLMQENNDQVLSRDLEASMIPEHEQYGEIDGKEQAEYDNENGESDNTSILGGAGTPVTEVGLTYYPNQVAPALLLGGTAGR
Ga0209296_100067734	F028717	AGGA	MDQKSFVGNDSQTNANQSAPGQEGSEEQVNPGAIRKSTTQSLLNALSNASGTNFTSVEDALAYVARTSAQQLGGNVQPVEQPKVQQTSGRVTTNDLHERFNELSQNLARKEQALREKELDSDIQRAMGDKFDSDLIDYALNKVKNNIQWNDDGTYAIVNQKGQERYGSDGMPLSIQGLVEEVAKGNPKLLKQSNLNSGSGLRPGQSSFTGALEETIPDYSRDPAAFNAWANKNGLGKGVGLKGLGVSASVSSSSRKIL
Ga0209296_100067735	F011761	AGGA	MAYVLGGANNEGDGFTTAISNFALRAMHESNGLVNFTNVVTPTQGQTFLVPNFAPITYQDYNPNGTGGTYGAGNAVVQNPSLGQGTITATPAVAQTAFDIFYGWTTSFTLAATLGAELGESFAEKVDQRVTLAFQSFKATPGNLYYSPTPVDGFARVLELGAMELAESGTNVTVAAGGTTGFSAASVLDLVRLVKQNFKVARMPGTPVIVLDSNGDAEGSVAGQTGSSLNRLLAELTGGAVSQSGGSNLSALGNELLTTGRIESVYGCMIMFTTFLTTASRTFLGSGPFSCLIGGYMGDSAIFTVMKEGLQLKTGEIPGGLQIWLTGVGYFGSGVGDLRRGGAINIQQ
Ga0209296_100067736	F002260	AGGA	MSVPYQRISNATVEDIQFYDPAAERRAAALNVDWAPYFKVGSQEWLYKLEFGWWQKYCDTVLGAYYYANLPDGQLISSFNPSLLIKSDQTLIRLDTFGAILVFYESLVTDVSNMNEVDVQNYEFAKKRCEDEWTKALQLMNFYDLYMDNPQGPTTKLEENWTADVDYFNGDRRYF
Ga0209296_100067737	F058142	AGGAG	MAEVAYSVLNSPTVTQNEIFAVVRRDIPTLWNIPIFEDFPSDSEVVRYGIYISDVHMVSRNPHQLGIQYCGAIYHAYDEFNITYISYQDDPYNVAVNSIIANLVTAVKDDGVQLMDGYFERDFEQVRTYGPTQAEKHTWTFRMLRMEFNT
Ga0209296_100067739	F003807	N/A	MTQQEQVWYKTNEEKLRSLIADEAKMMPMLDNMMATIKQLKAKQAFRLALLNQLLEQLNENE
Ga0209296_100067740	F058146	AGGA	MKLSQLTAKPQLIDIHIDDEDTIKEFGEPIEFWTWDRQPMDTFMKLASADHNNVIGLIGIVRTLILDEKGKEILKDDDMLPTHVLMKAIGKVTELLGK
Ga0209296_100067741	F040626	N/A	MALILTIDGLGKRYGMLPSEVLHRSNTFDLYIMDAAMTFENYHHKKSMNNGVDPLPEYSTDDLLAMFNKNKDQ