NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1000473

Scaffold Ga0209296_1000473


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1000473 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34868
Total Scaffold Genes66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (57.58%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002977Metagenome / Metatranscriptome516Y
F009137Metagenome / Metatranscriptome322Y
F035192Metagenome / Metatranscriptome172Y
F058680Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100047311F009137GGAMSEGLEKFCKNYEVRVLNDQKRRARYHPARFFTDPFRADIIRNDVVEYETEKVYTVEIPEGRLRTLVEMERKFFNYVSHHDQPVDLFQTLMEKEREEAHYRNTNQAVQKAYEQYSIMLNLAGYQRKF
Ga0209296_100047351F058680AGGAMINEEDTSSEDALAEFLAKGGVIQQLKPNQSGRVDGASYSSWSKKKPSVSPLASPPEDQD
Ga0209296_100047361F035192AGGAGMSSKETLDKAYGNMPKEVGFNVDWGFIPSWRGVKYYWYTLVRKVTR
Ga0209296_10004737F002977N/AMKTQIPAEGIMKTNDWGDSRVYRIACNCGDENHNHNMWVEADDHDIQVTIYTTGKTNWWSKTRWHHIWTLLTKGYIDTESSVHLTKQQALNYADTLKSAIKDVETFRRPKENSAIIREANEQDCV

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