Scaffold Ga0209296_1000440

Overview

Basic Information

• Taxon OID: 3300027759
• Scaffold ID: Ga0209296_1000440
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35775
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (85.25%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000961	Metagenome / Metatranscriptome	820	Y
F010821	Metagenome	298	Y
F011282	Metagenome	292	Y
F016392	Metagenome	247	Y
F091631	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_10004402	F016392	AGGA	MTTAFDYKGASIWLRDEKMKRFKQGEEYAKRKQDKHGIHEKNQVFIYSKALSKKTK
Ga0209296_100044037	F091631	AGGA	MAQIMKNQPKGYGTHATMSGNPAASDKTGEHGSAKKGIPAAKTNATGADKAFDGGRSSGVCYTYDRKCSQ
Ga0209296_100044050	F010821	AGGAGG	MTDFTFSPTDFNATTILVVANTPDAKQYLAERFGLGCVSLEIRKSAAPEFADSFEFQGLSYA
Ga0209296_100044056	F011282	AGGA	MKKIKNIVVITGTYTNKDGQEKKRYQTIGSLFEDGENLKIKLDTIPLVDGGWTGWANCYELEDRAEKPRKSSFDDMPSDIPF
Ga0209296_10004409	F000961	N/A	MEIDPVKYGVLWQKVQDYERRFDQMETKIDKMEASIEKLVALANQGRGGFWVGMALVSALSSAVGYISHWMGKN