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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027759 Open in IMG/M |
| Scaffold ID | Ga0209296_1000235 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 48032 |
| Total Scaffold Genes | 96 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 55 (57.29%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004256 | Metagenome | 446 | Y |
| F009749 | Metagenome / Metatranscriptome | 313 | Y |
| F024484 | Metagenome / Metatranscriptome | 205 | Y |
| F048781 | Metagenome / Metatranscriptome | 147 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209296_100023556 | F004256 | N/A | MKYEYYYNNVPGQGLCRNNLIYTSLISEDKKTFVQWYHNDTEYHKGKNQVVDPSKMEEKWLREVNYLTQMRNNYPNLVPTIKNIDLDNRKLYLEIDGPDFWEQAGCDMTNYDTILPDWQDQMLEIIHAHKSLGLHKYSMHPSSYFIVDGKLKSINYFFTYRVTEPNISIEEVESHIYSTRQDEIRKHLSSMGIEWNVPQSWQTMDQLCWNSFRTNYPADFIAKALNV |
| Ga0209296_100023566 | F024484 | AGTAG | MLTPTNYTTNPNLFQEACHHLPTGGMKTTINQPTGNFFYDPWVLKDEYKGTVWETLYDSLPVSKGEARIIILDPNQCYQIHADIDDRYHLNILGDNSYLIDLVRETMYPLSQDGIWYDMDASFLHTATNFGRRARVQLVVRKLLKNNKLNNPVEVSLATSMENTGHARFLFDNTMSPWFNEANKLGLINNFTQGVVGITFNIEQDKLESFKRMLPEEFKIL |
| Ga0209296_100023587 | F048781 | GGA | MSGWNTIQRIKRIEEEIDKLGFKFAKSKHTDWSEDHGALSLLPKDHEALPIYNRDAELFVGSLERLEDWINGVRWAREYDRMLKISDDDKRAKAEQKEKNRILMRMIKEGKQVEGIEK |
| Ga0209296_100023588 | F009749 | AGAAGG | MTYSWILIVAMYSPAGDFMSKDTLQFNSRKDCEAVRVQLPNLDHPMKVRHKGLCVTRDHWEGKKQMPGVAYD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |