Scaffold Ga0209296

Basic Information
Taxon OID	3300027759 Open in IMG/M
Scaffold ID	Ga0209296_1000043 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027759 Open in IMG/M

Scaffold ID

Ga0209296_1000043 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	110971
Total Scaffold Genes	117 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (12.82%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

110971

Total Scaffold Genes

117 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (12.82%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002332	Metagenome / Metatranscriptome	569	Y
F002739	Metagenome / Metatranscriptome	533	Y
F022861	Metagenome / Metatranscriptome	212	Y
F024031	Metagenome / Metatranscriptome	207	N
F025478	Metagenome / Metatranscriptome	201	Y
F046328	Metagenome / Metatranscriptome	151	N
F052406	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_1000043104	F046328	N/A	MGLSTTDLGTGTGSGMPKTIGPGNHTLTINSMHLEDFQFIDGAKHLILNVETEPIEGFEGFMIDKDDESKGHHKGQIGRVKASQYAFADGETKSGIKIQRDRSIMIFLSNMSKNLEFYEWFVEQDNKFNTIEDFVKNFSDNAPYKGMPIEFCIAGKEYMNKSGYVNYDMWLPKAENKTYAYGENVMVYNEAKHLKKMEIKNVDKFGDDDDNFTPPSKNSSDFSLD
Ga0209296_100004329	F052406	AGCAG	MKPTKFFTMHRVDIFSFLASDATELMKMQTRLNQWMTSRSLVKYEIHTTGEYIIFNVCRKKEQE
Ga0209296_100004333	F002739	N/A	MATIKTGGEKHRIYKKTTKIGKGKPGDIMVNHPSSENGKWDTINLTKKAGAKTVKQGEAASRKWHKDNPHSKIKKKK
Ga0209296_100004340	F024031	N/A	MNKFKTLRGRRILIEVPVKKESVIKLSSKDDDALMYEAMKQWNRLTIYAVGDKVEDVVAGDVVYIAVGQLEHAEKIDIDGSVKLMLNEMDIAIIW
Ga0209296_100004352	F002332	N/A	MALVNQVQKRVVMSIEDIIKFQILTHCYLNRIMVSDSDINCLTLLSQLGPIELTHFCYDASEEYKIFKSPQTVRNCINKCEKHNLITKDSTNKKLILLNPDMKIQTKGDILLDYKFLGK
Ga0209296_100004363	F025478	N/A	MAIRKTTTVKKAPTKKSSLGISIMGGNKADMRKWEVESALSTLKRADEIRKNTKMMADVKKLAQEQVNVLNNFTKGK
Ga0209296_10000437	F022861	N/A	MKAVCIDSSDKPSKIPQNEWITEGETYTITRIVRMGLEKNKFGVLLKEVQLSSQSFPYELYDAARFLPLDILANIKEEEEVTVKEADLELV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209296_1000043

Overview

Ecosystem & Geography

Associated Families

Sequences