Basic Information | |
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Taxon OID | 3300027759 Open in IMG/M |
Scaffold ID | Ga0209296_1000004 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 356865 |
Total Scaffold Genes | 458 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 292 (63.76%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001443 | Metagenome / Metatranscriptome | 693 | Y |
F011825 | Metagenome | 286 | Y |
F021237 | Metagenome / Metatranscriptome | 219 | Y |
F059640 | Metagenome / Metatranscriptome | 133 | Y |
F081327 | Metagenome / Metatranscriptome | 114 | Y |
F094831 | Metagenome | 105 | Y |
F098647 | Metagenome | 103 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209296_1000004121 | F011825 | N/A | MEQSKKPVEQYYYSKDEWDRLGCGPLPPERDRAKKLEDVMSRGNPKTDGKVVKGYN |
Ga0209296_1000004146 | F098647 | AGGA | MFNFKSVVDQVATASKQPLTFVEDKAIRANLETLVDSYAGFTKTVYDTNLELAKQVVESTKSVDFTKAFEKFTATK |
Ga0209296_1000004156 | F021237 | AGGAG | MRYYDYEWDLEPNRILLDAELNVDALGWRGGDYFKVINHNGRVMLVKVDPLEKFLRDGVGDEKI |
Ga0209296_1000004194 | F059640 | GGAG | MNSIYNYLGYEYRPWDDVEPDNIKTFHECYKNGQRVKMPEAFYCHSPYDTMTFEQFVGHVQTVEVFVQG |
Ga0209296_1000004195 | F094831 | GAGG | MPYVPQELRTQSFIAGFNDVYMTVQANPEMRMIPISQLETVRRGLRQLGYRFRIVYRGPHRRNRSTLKHNARAFNVYFGDY |
Ga0209296_100000424 | F081327 | AGG | MFPFGDWIYATWDYIKKDYHEWPLRFCAEVFSWACSVVSAIIFAVSVPEIPVIPLYSIFIAGCAAAAWTCWTRGSFGLLANYAFLIFIDAIGLIRFIIKTT |
Ga0209296_100000464 | F001443 | GGA | MPMYETTVRTPEGEKKDRVWARDLAEARMLLEQRHGPRNVPYIPHIIPS |
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