Scaffold Ga0209379_10051509

Overview

Basic Information

• Taxon OID: 3300027758
• Scaffold ID: Ga0209379_10051509
• Source Dataset Name: Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1568
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Atlantic Coast Under Amendment With Organic Carbon And Nitrate

Source Dataset Sampling Location

• Location Name: Atlantic Coast
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004866	Metagenome	420	Y
F006666	Metagenome / Metatranscriptome	367	Y
F097168	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209379_100515091	F097168	N/A	MAISFKEDGHLYESIDQDKISWTSVTSLVSKFKPKFDRDGQAKKSSK
Ga0209379_100515094	F006666	N/A	VKPKSHKDFKKGIADKVGVHQSVVDDFLSFYYAKLRGKLSNLDFPRVYVDGLGTFYLRKTKLEKSIKRGKSIIGNLAKRTYSGFAKSEDIQKDIVQMEKALAQMEKDILTKKEFRNNNV
Ga0209379_100515095	F004866	GAG	MAIVNKVDLKQQVDIDVSIRYQIVTYCFFNDIRISNSDLEFLSELSKSGKIELTKFCNRLVGETIFKSSQSARNAITKAEKKGLLAKDGINKKTIMLNKAMNVQTKGLVLLDYKVLGREAKES