Scaffold Ga0209596_1058600

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1058600
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1971
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004231	Metagenome	447	Y
F015570	Metagenome	253	Y
F024504	Metagenome	205	N
F029673	Metagenome	187	N
F079808	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_10586003	F004231	AGGAG	MSVKPKDFQHEICVYLEGIGECLVCFDILSPGDELDADHSDTYEIDFSVFDEDDKHITYDISKKQYNHCENKAMDEMRDITTQWHKEWETCFD
Ga0209596_10586004	F029673	GGAG	LTKAEMVQHLRMAACNENTITGMSNAFDLGAEHERDVVSSIIFNMVKEQHLAQNIVDTIRVRE
Ga0209596_10586005	F015570	AGG	MNDKLDEAFDLLEFDVTDQIRNMEYLAEQKKISTGVTDGSIQRALVRDLTENLRTLPVSNDPLLLRNDVLEEVAVELAKLPFGDTAASYAAFVRAMKS
Ga0209596_10586006	F024504	AGGAG	MDRKTVGITAPYRKSDYTYQDMLLDRIKDLEALVAKLEQRIKVLEAK
Ga0209596_10586007	F079808	GGAGG	MKELLETIYEDESNVYYCCYCLQPQGEKIGCCHENHFVEFKYLDNDCKQDIAQEILNG