Scaffold Ga0209596_1028476

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1028476
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3197
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000332	Metagenome / Metatranscriptome	1283	Y
F001538	Metagenome / Metatranscriptome	674	Y
F012435	Metagenome / Metatranscriptome	280	Y
F034828	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_10284761	F034828	GGA	MVTKKPPAKVAPVKRRTPKPKAEQTINVSVAAPIAAKQEAKKDDSALGKVIGLIEWVDNPFKLFTVILLSFLFFAGYFAWDSRQVILHAITTQDKMPQLAKQENLLAPARSLMKDVDGIVVLIHKANLSTNSRTTVLAL
Ga0209596_10284762	F001538	GAG	MIDTIKLFPTVQPSGYPDKHDLAQKKLERQHEVNKANELAKQKQVQLQDIGFEIYCKKSLQERLRMEIFNNRKLDIYV
Ga0209596_10284763	F000332	N/A	MRWLILLLLLGLVGAVAKNGCHVREFYGIGYTVHDPTQRHKEMMAWLVQNAEHCKSTDYVVIWNNLAEWSGTADSVWLRNAVIHGYKEAQEREKK
Ga0209596_10284764	F012435	N/A	MVEIDLVKYGVLWQKVESMESKIDKMEAQLDTLIELANKGRGGFWMGMALVSGISSIFGYISHYWSK