Scaffold Ga0209596_1027100

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1027100
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3306
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001733	Metagenome / Metatranscriptome	644	Y
F012219	Metagenome / Metatranscriptome	282	Y
F039641	Metagenome / Metatranscriptome	163	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_10271001	F039641	N/A	MIPAAYSNALKNAIQAYSYADRVAIWRTVNQADGIGGVAQHWIQVAEIRGTISNTGDTEGVVGGMIEQSGTWTLTCSPDIEVKADDRIYTSGNPQNLAPYYEVIGSDYGHTNAVSQTIGLRARTNG
Ga0209596_10271003	F001733	GGAGG	MNSISIKRLVVVVIVAFVAAFTSVFGDGIRTSEAHDLGELGAVLALYGSKAVAAGVSAAVSSVLAFLTMPFKGVGANSLKVGK
Ga0209596_10271004	F012219	AGGTGG	MNFQNFSVVKEPAPSTDWRIFGDITDDAGNILGTFGQDGTSVNIWWVQQDEQFQSLIVNQFAVIMAQQIIIGDAE