Scaffold Ga0209596_1016715

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1016715
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4542
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031492	Metagenome	182	Y
F047047	Metagenome	150	N
F049615	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_101671510	F047047	AGGAGG	MATQPKQFRYPAINLLATFTAGTNDQEMADMLGISRSCVVRWRTGFHTILEYQADRYAIRLGFHPAEIWTNWLDDAMSIA
Ga0209596_10167154	F049615	AGGAG	MTPDTVNLIAELEQRVSELSTALELVTEDRDNLRDAGNSLMTELDLCRATLTQAHSDISRLRVYLAQGAEL
Ga0209596_10167156	F031492	GGA	MTQFNVGDKVILDDISGVIESIFMVDGKETTYDVRYTSMDIMIATDVPEEDIQHWQADEQ