NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1014041

Scaffold Ga0209596_1014041


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1014041 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5099
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014735Metagenome / Metatranscriptome260Y
F031866Metagenome181Y
F048309Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0209596_10140413F014735N/AMLTIENIEKIIAINSQQVEVMGWECEPDFYEFTFEHDNIHSTTFKVHMDRHPNRNDKNSFTMKLWDGINSTPLEYGFGLHDVKDPFTLLNYFKEVLYDWDNVTNK
Ga0209596_10140417F031866N/AMKKIRKKNPQFLKGIQFNIPLFNAEKQMYVCTGVNELALTPGGKDYLISLSEVKQSYSVPEKITISLFIPHTDANGEPAHVNMLELRENNRTLPLTKVMVTKSKLSSLGGLKKVFYNMAKSI
Ga0209596_10140419F048309N/AMLTIKNIDKVINMTCYGREIYHVTTTTNKMNEQAYVFEFDLIDSGDGGWNKPKEIHLVRNEYNGTYRLFCMGLQMATERKITLSEVKCLTSLLVEISEVLRKTHWWWKHSNIKNKTN

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