Scaffold Ga0209596

Basic Information
Taxon OID	3300027754 Open in IMG/M
Scaffold ID	Ga0209596_1013753 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027754 Open in IMG/M

Scaffold ID

Ga0209596_1013753 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5166
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (6.25%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5166

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (6.25%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	8
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005090	Metagenome / Metatranscriptome	412	N
F005630	Metagenome / Metatranscriptome	394	N
F007751	Metagenome / Metatranscriptome	345	Y
F010836	Metagenome / Metatranscriptome	298	Y
F011392	Metagenome / Metatranscriptome	291	Y
F105160	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_101375313	F005630	N/A	MSKNLYEVGGFYGTRNRGTILVYETNSGKRWYCVEGSCNINCTYDEINEGCDVERLSDFDTMSSRDGIYSVSDLYDFVIN
Ga0209596_101375315	F007751	N/A	MNLVSELKSVIGKDVSQNQSPTCRGKLIKVGKLYSTFESVPSPYAKFTKPEFIGVKYKVPNWIAWNSFFY
Ga0209596_101375316	F010836	N/A	MSTSNFHNVNASAIFAVPLENDFDYEDLVDNLKSELKDNSDYVDYGKTDQNELRSFPSRTLGSIRRYHQYKDFYVEVCVTPVIRSGYYSGCNLDWNVDYLINGDASYDSPDFYIDDIAHYGNLSKSAATKYAKLAEKKAEKLKNEIVEQLESIYNNYSDRYGVTAVFSNGETIYHKL
Ga0209596_10137533	F005090	N/A	MKKKMKFVWCGVNFELPAECLRTTDYWGKPLDNPYISIGRKECPAIAKQFMKAKYPHLLVWGNSETFANGNSASVYVCNADGSDLDIASKEWNEINSFVRQMCGGRYDGWSESYEYGEPGKSDNGTKLDFGTKYLHVENKAPHGSWPSAIKTIKGLIAGEYVFGVLSLDKAIEKAKGYGYSEPTIKKALELI
Ga0209596_10137534	F011392	N/A	MNLSIKELNELIYSLGITASKGIFVNKELNASLIDKLYSELNSKIAIQSDITDEVIDRVKSHYVSNEEADEDYRSSLQQDSDRYESSVEKDYDNHLSKLKQRGYITQAILDYVDKKGAVSHGDLERYYKSITGSNSFSHILESLRTPYKNRKTQRYIAKEGKRYSDALYVIKVANPSNWVVVENDFIKWIKSNTK
Ga0209596_10137539	F105160	N/A	MTIEEQMDIELILTEASAWGLQNEVEQSAKQFINEGHKVVDAYQYAYEDWVK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209596_1013753

Overview

Ecosystem & Geography

Associated Families

Sequences