Scaffold Ga0209596_1010137

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1010137
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6306
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001561	Metagenome / Metatranscriptome	670	Y
F013087	Metagenome	274	Y
F103250	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_101013710	F001561	AGGAG	VQSREQKLVYLKKTIETLWHGVSDTKTGDYPLIISLYKEVLMHDYHDADSWENMIWLMWSMAVNNKDTVWLFQAEKFAKRYLSLNPNGYRAYEYLGQFYRIMYVDLRLAVRYYESAIRWKDAPKSTHYSLISLFNKLNDKRMAIGYCKMTLAKFPNDEYATMRLKEINVR
Ga0209596_101013713	F103250	AGGA	MQKIEIKTTYGWSTAKIGRYANGNLGIQLFQEGMPLAKISTNLIDTVLEPREFHFNSNDAGSLKEDVLKSGHFEDTGKTNFSGYCEYPVFRLKDHVEVVEG
Ga0209596_10101379	F013087	N/A	MEPTVWIYFSKTGTGYELKGSDVISGFDAFINTDGTYMVEYAFSDMKNSMHFFIYEWDNSQKKRRTVFEGYQRENVLVNFAKNVHVCHLVRQAIYKDYLIVNDEEELERAIS