Scaffold Ga0209596_1008765

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1008765
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6939
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009954	Metagenome / Metatranscriptome	310	Y
F016152	Metagenome / Metatranscriptome	249	Y
F031365	Metagenome / Metatranscriptome	182	Y
F082680	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100876510	F082680	N/A	GSGNGSIKTAIESDRTLGGLVDTLRVISAESGTYNSGDQSFLSYRYNLTIWG
Ga0209596_10087654	F031365	AGAAGG	MAKSAIVLTGIKETRKALESFDKQALRKFDKVINTELNNAKKDARNLVSGTPPLSGWSTTAPAKPRSRGGAGWPAWDQSIIKTGIVSSKAERKVRKDYTTSAGALINKSAAGVIFELSGRSNKGAGKNKFISNLEKKESQASRLVWKVVDKDKDKIERNVEIALNEAKATLQKNLEKERA
Ga0209596_10087655	F016152	N/A	MISVETGLSPTDLMDAPDGVLEAIVIYLKEKNKKAGA
Ga0209596_10087656	F009954	AGG	MDGLQIKIKTNDGQEGTYSLRPRSIVQFEQKFGKGFAKLLSEDQKLEHIYFLAWSALKDGGKVVKPWGDAFLDTLDSVELIVDPNLESTETA