Scaffold Ga0209596_1008647

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1008647
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6992
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (50.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003213	Metagenome	500	Y
F003332	Metagenome	493	Y
F013413	Metagenome	271	N
F024785	Metagenome	204	Y
F032279	Metagenome	180	Y
F055728	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100864713	F003332	AGG	MAGTTVVQSGNYELEIDTGFLQDAFTLDSATMGILDGTQFVLNGTTNFASVLDGCDNVTIKRGRQDIGDQFSAGTMAFTMLDTTGVFNPFNEDSPYWDATTEQPGLAPMRKVRFARYDTNDVKQYLFKGFVVNYDYNFALGGIDTVTVYCSDDFYLLSQTYLDEFNVSEQLSSARITAVLDLPEVAFPIAQRAISAGTQTLGGSAAFTVDNGTSVQAYLAQINQAEQGRLFMSRDGDLTFQPRIGNTLSSSVADFHDDGTNIPYSGVGISFQADQVCNRASVTIRGSNNPQVADDAASQTLYFIQTQSITESLLNDDTAALSLANYLLEPEPIARYTSVETAFMSLTGLQRDQVAIIDIGQTITIEHTFTTGATTSELAQELAIEGVEHIISLSQGHSIALFTSPTVIVYELILDDAVFGIIAPSDNVLG
Ga0209596_10086474	F055728	GGCGG	MRRSYDPYYGNREQLRAQSEHGMKVARERDALKAENAKLQEQITELKAIIAYMTEGE
Ga0209596_10086476	F013413	N/A	MRSYSATTVLYHVQNINPNRKEKAMTENEYNETFDLQMEREHQETLRRMQEFRLIGEQISKMPDTPPKVLEIEVRYLMGIIGELETRIKDLESEARRLEMLLTRAN
Ga0209596_10086477	F032279	GAGG	MHFIIKLTIAFALSAIGVGVSQIPQPQPDMSTTTPTDKPYEALGGFAQVMADIYRYVPPVTTTTPPAPVYRHGDCSWLPALALQAGWQPEQIPQLTKYAARESGCCPNRAGGDTVDKDCNITGVAEWSHRSDSGLLQINGVHWKPDHPQYDGLICKQMRICTQKPLLDALTNLRAARLIYLRVGWSAWGN
Ga0209596_10086478	F024785	N/A	MDYWITRAIRHSNVSLWNNGSWQIRDIKNKPGTISNHAKGVAVDLSYRLIANQVGKSIYMGRQRSLPYIIKLLENADTLGVELCIDYALRRSWKCDRGTWIAGNFQTGDWYHIEVNPVMAHSVELAKQAWDKVFGLIPAVIKKPV
Ga0209596_10086479	F003213	N/A	MNTKKINRSHRQIGDQTTKGGLLGIMIYTMSRNNVDPVLIGLIVPVAASVLAWISTKIGDPDLACMFIPDDKKAD