NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1007110

Scaffold Ga0209596_1007110


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1007110 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7956
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.26%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005630Metagenome / Metatranscriptome394N
F006303Metagenome / Metatranscriptome376Y
F011935Metagenome / Metatranscriptome285Y
F088906Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0209596_100711010F088906N/AMEKQSSRIVNKGLAGEPQHLVIQVTDTLKIFEFSQIKHVNESDVIRDITLVDDELNQPEILHILNDMGQTVDITFDENENVTIYF
Ga0209596_100711013F006303N/AMLNWLKDKIIPKYKPNEKEKLILDVVNNLCQHPDTDILMAPLSARYYLINKKLEYWVRVYDNGITITNHKFTFSNTSPQMFQDMIVELIVHAIEKSRDEFETAVFQNELQLLENIATSIKYTK
Ga0209596_100711018F011935N/AMIKEIQNFDKVYGEQIYPADGMVYTIEKANVIKTNSEPELIEYIAVKLLDMYNNHKPAEYSVAIFADNKDNHNIACVYKRGEQSSIFTDKGMSSTHYKNKEFFKTYVVTLINRAIK
Ga0209596_10071104F005630N/AMNLYEVNGFYGTRNRGTILVYETNSGKRWYCVEDSCNINCTYDEINEGCDVERLSDFDTMSSRNGISSVRELYDFVIN

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