Scaffold Ga0209596_1007110

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1007110
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7956
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.26%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005630	Metagenome / Metatranscriptome	394	N
F006303	Metagenome / Metatranscriptome	376	Y
F011935	Metagenome / Metatranscriptome	285	Y
F088906	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100711010	F088906	N/A	MEKQSSRIVNKGLAGEPQHLVIQVTDTLKIFEFSQIKHVNESDVIRDITLVDDELNQPEILHILNDMGQTVDITFDENENVTIYF
Ga0209596_100711013	F006303	N/A	MLNWLKDKIIPKYKPNEKEKLILDVVNNLCQHPDTDILMAPLSARYYLINKKLEYWVRVYDNGITITNHKFTFSNTSPQMFQDMIVELIVHAIEKSRDEFETAVFQNELQLLENIATSIKYTK
Ga0209596_100711018	F011935	N/A	MIKEIQNFDKVYGEQIYPADGMVYTIEKANVIKTNSEPELIEYIAVKLLDMYNNHKPAEYSVAIFADNKDNHNIACVYKRGEQSSIFTDKGMSSTHYKNKEFFKTYVVTLINRAIK
Ga0209596_10071104	F005630	N/A	MNLYEVNGFYGTRNRGTILVYETNSGKRWYCVEDSCNINCTYDEINEGCDVERLSDFDTMSSRNGISSVRELYDFVIN