Scaffold Ga0209596_1006366

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1006366
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8548
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000722	Metagenome / Metatranscriptome	922	Y
F011919	Metagenome	285	N
F023058	Metagenome	211	N
F033421	Metagenome	177	N
F041766	Metagenome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100636613	F023058	AGG	MAGVAVIGSGNYSLEIDTGYMWDAFTLDDDLKGELDNTQYVLDGVSQYAEVMDGTIALTAKRGRANTGDQFAYGTMNFTLNDTFADGVFNPFDTTSPYYDPANEQPGLAPLRQVRFSRYDSLNVKKYLWVGYIVNYDYTFTLGGLDTVSVNCADFSYQLGQTFLAEWNVTEQLSSERFDDLLDLPEVAYTGTRSIETGVATLGGAAAWTVANGTSVAAYANKINEAEYGRIFVDREGTITFQKRLGTTLGVPTAEFHDDGTEIGYSAIDISFQADTVVNRASIQHAGAASPQVAEDLVSQAAYLVQTQSITDSLLHNDAAALTLAEYLISPDPEARFNFLGTEFPGLSTADQETLALLDVGDLINIQKSITTSAGPTQFAQDLTIEGLEHRLTLSAGHAVTYYTAPTTIVYELILDDIVYGTLDEENVLG
Ga0209596_100636615	F033421	AGAAGG	MADGIETRIEVYGLKEALKELNKIDKSLRREITKDYKRITAGLVSDIESAIPLNYPLSGWQRRWTLRGSYEVFPWPTEHKVKAYINTKPPKEFRSNTVNLTTFAIKWIGAAASFFDFSTSNAMGQHLTAKYGDASRVVWRQYEAHKDELNRAMEDLVDRVGKAVGQNLKAQ
Ga0209596_10063665	F011919	N/A	MRESETDPMSDLQLFAPTRGLGAYREECAIDRNIVIISPSAKPTSVIAALRALPKSGSKRRRVYEYLKQTGGATDEEIERALGISGNTVRPTRGSLVKDKFVYATELERPTISGNMAIVWKAR
Ga0209596_10063666	F000722	GGA	VTEESYPETGITQETRNMYPENYSDKYNKVFKEFVDDIMKPPRPIDRLDDHSILLDELTLMYDAHMTIGGEQNRFNASVIRAAINVIRSC
Ga0209596_10063668	F041766	AGGAG	MTEPKVFIYEVGRCNLENGQEILVQIFRHEDTHTIIRAQIAFRTLAGDSWGVPTELSFQQ