Scaffold Ga0209596

Basic Information
Taxon OID	3300027754 Open in IMG/M
Scaffold ID	Ga0209596_1005459 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027754 Open in IMG/M

Scaffold ID

Ga0209596_1005459 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9379
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (12.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

9379

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (12.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F048248	Metagenome / Metatranscriptome	148	Y
F074450	Metagenome / Metatranscriptome	119	Y
F076942	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100545910	F048248	N/A	MKISVTYEDSDVAKALGKIIKDPNADQFIKLFTPMICTSQQATEYFFKLMLGNKLPELIPYGTLCKLHINQLGYGSNKEAIKDQFADELGNVIVTVKDFRGYHEYSQYHVEYSNILENGTIKKETTYVQSKDLEVIEDL
Ga0209596_100545912	F076942	N/A	MDSKVIVIADEATGTVINVSENNPQYGYVKLQQVRNVIDDNGFLRRKPVNALLPGTVEDLKMLNLFAGQAMTGKIVIEEGLEPFNKKTPERDLKIAGDTGIVCTWQGLPIYRRTKFTFDSIQEDSYQKHDNVDELRAAYANSVKSNTSAIQNAAGQDFSIEA
Ga0209596_100545913	F000716	GAGG	VSLFLFLIKKMYMKKMEKLKKNVTDYQLNAGKTYINYESDGYSQYQNYLYKRALYGLDALSQEELEATCSKKKQRIINVYKRAQSVLNIEKQKATINYTNVLFKSLFPNSKLTEALIENSEIDEKFKNTLTFKDLNISKKQIVTIFMIEGILPKNFLSLIEGPNQLPRLKHENKA
Ga0209596_100545920	F074450	N/A	MEDYSKTDVITRLLSMDLITRKRVLVDQRSYLIGILAYRFMMSEHKIADLTNIKRDKINYNKKLVIQFYNDKLYKQNVYVYAQMFPFDFSVIELVSITHRLKKITIDMDKKFYNKLKAAGAILGHNDVRVTIKLFLEKSLKLWEE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209596_1005459

Overview

Ecosystem & Geography

Associated Families

Sequences