Basic Information | |
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Taxon OID | 3300027754 Open in IMG/M |
Scaffold ID | Ga0209596_1005459 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9379 |
Total Scaffold Genes | 25 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (12.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 8 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000716 | Metagenome / Metatranscriptome | 923 | Y |
F048248 | Metagenome / Metatranscriptome | 148 | Y |
F074450 | Metagenome / Metatranscriptome | 119 | Y |
F076942 | Metagenome / Metatranscriptome | 117 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209596_100545910 | F048248 | N/A | MKISVTYEDSDVAKALGKIIKDPNADQFIKLFTPMICTSQQATEYFFKLMLGNKLPELIPYGTLCKLHINQLGYGSNKEAIKDQFADELGNVIVTVKDFRGYHEYSQYHVEYSNILENGTIKKETTYVQSKDLEVIEDL |
Ga0209596_100545912 | F076942 | N/A | MDSKVIVIADEATGTVINVSENNPQYGYVKLQQVRNVIDDNGFLRRKPVNALLPGTVEDLKMLNLFAGQAMTGKIVIEEGLEPFNKKTPERDLKIAGDTGIVCTWQGLPIYRRTKFTFDSIQEDSYQKHDNVDELRAAYANSVKSNTSAIQNAAGQDFSIEA |
Ga0209596_100545913 | F000716 | GAGG | VSLFLFLIKKMYMKKMEKLKKNVTDYQLNAGKTYINYESDGYSQYQNYLYKRALYGLDALSQEELEATCSKKKQRIINVYKRAQSVLNIEKQKATINYTNVLFKSLFPNSKLTEALIENSEIDEKFKNTLTFKDLNISKKQIVTIFMIEGILPKNFLSLIEGPNQLPRLKHENKA |
Ga0209596_100545920 | F074450 | N/A | MEDYSKTDVITRLLSMDLITRKRVLVDQRSYLIGILAYRFMMSEHKIADLTNIKRDKINYNKKLVIQFYNDKLYKQNVYVYAQMFPFDFSVIELVSITHRLKKITIDMDKKFYNKLKAAGAILGHNDVRVTIKLFLEKSLKLWEE |
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