NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1004944

Scaffold Ga0209596_1004944


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1004944 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9997
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (52.94%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006138Metagenome / Metatranscriptome380Y
F012113Metagenome / Metatranscriptome283Y
F019290Metagenome230Y
F029043Metagenome189Y
F049401Metagenome146N
F086801Metagenome110N
F090073Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209596_100494414F012113N/AMQQILSFIQSQDVFAWVGALVALLSAVIAVASLIPGDEPEATLIKIVSLLSKLSRK
Ga0209596_100494415F049401N/AMLIWIIGGGIVLSSCASTNYTYTAPSPADIPELIMEWDRLERTIGLVKPEFREQYAKALKALSNAIAEEERWRSRAENK
Ga0209596_100494417F086801N/AMTSVKLVASNEFTEKHAYHLSQIQLATIEAIETKYRAGQAEHGASGPLWAMPTISVTENSIAESVDQISYLMTLRGQIKIIYELARLGMEDSDLCATTARDSCKK
Ga0209596_10049442F029043AGGMSKDEQAIKALQYLLDEGFVSLGYIDGQPSVFLTTSLADAQKAILGLARDSADWWK
Ga0209596_10049444F006138GAGGMAAATIGTTGLVFGLTAETIGLVQSFSETRNIEKNEVRNQQGEITAVGFYNPTTAYSLSVAITGNNALTVGGSFAALANATTVGTCRIDSLTLNKSNSAFVMLDISATGYPNVS
Ga0209596_10049445F019290N/AMEGTTYWGTTNLKVAACVAAFGATLRQSDPVTNIVKQDGSRQVTFWFNAGSGNIEAKKQMECKWSEVTADPESPILYVRAALENRETLLGLCKRTEPIQIISKGGQTLLVPVNAKPELKRAILRAM
Ga0209596_10049446F090073AGGMNEILDDELNGSFVKPGRDYKGDAIADYTEGSRLLMIQCKEPQDSSVYFVWAFLYIHILIAKNRREAIKLAWNKDEFRDQLLGWIEDKTEDDRTLATNIVSEMIEEASRAKVSVVSSGNVIPGND

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