Basic Information | |
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Taxon OID | 3300027754 Open in IMG/M |
Scaffold ID | Ga0209596_1004944 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9997 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (52.94%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 8 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F006138 | Metagenome / Metatranscriptome | 380 | Y |
F012113 | Metagenome / Metatranscriptome | 283 | Y |
F019290 | Metagenome | 230 | Y |
F029043 | Metagenome | 189 | Y |
F049401 | Metagenome | 146 | N |
F086801 | Metagenome | 110 | N |
F090073 | Metagenome | 108 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209596_100494414 | F012113 | N/A | MQQILSFIQSQDVFAWVGALVALLSAVIAVASLIPGDEPEATLIKIVSLLSKLSRK |
Ga0209596_100494415 | F049401 | N/A | MLIWIIGGGIVLSSCASTNYTYTAPSPADIPELIMEWDRLERTIGLVKPEFREQYAKALKALSNAIAEEERWRSRAENK |
Ga0209596_100494417 | F086801 | N/A | MTSVKLVASNEFTEKHAYHLSQIQLATIEAIETKYRAGQAEHGASGPLWAMPTISVTENSIAESVDQISYLMTLRGQIKIIYELARLGMEDSDLCATTARDSCKK |
Ga0209596_10049442 | F029043 | AGG | MSKDEQAIKALQYLLDEGFVSLGYIDGQPSVFLTTSLADAQKAILGLARDSADWWK |
Ga0209596_10049444 | F006138 | GAGG | MAAATIGTTGLVFGLTAETIGLVQSFSETRNIEKNEVRNQQGEITAVGFYNPTTAYSLSVAITGNNALTVGGSFAALANATTVGTCRIDSLTLNKSNSAFVMLDISATGYPNVS |
Ga0209596_10049445 | F019290 | N/A | MEGTTYWGTTNLKVAACVAAFGATLRQSDPVTNIVKQDGSRQVTFWFNAGSGNIEAKKQMECKWSEVTADPESPILYVRAALENRETLLGLCKRTEPIQIISKGGQTLLVPVNAKPELKRAILRAM |
Ga0209596_10049446 | F090073 | AGG | MNEILDDELNGSFVKPGRDYKGDAIADYTEGSRLLMIQCKEPQDSSVYFVWAFLYIHILIAKNRREAIKLAWNKDEFRDQLLGWIEDKTEDDRTLATNIVSEMIEEASRAKVSVVSSGNVIPGND |
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