Scaffold Ga0209596_1004035

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1004035
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11317
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002386	Metagenome / Metatranscriptome	565	Y
F013504	Metagenome	270	Y
F014365	Metagenome	263	Y
F045619	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100403512	F002386	AGG	MKFAFIPKGQYKIGQYISVHGKTMRIVSYTHTGRNVIVQSLFGAPKFEQFVCICTDSPSL
Ga0209596_100403519	F014365	AGGTGG	MKTFQLFRNVSYEYFIEAETLEEAKNKIMTENPNYESEELIEWVFLDEHDGADWKYEPVLQAN
Ga0209596_10040354	F013504	GGA	MALKITAVNNTNGQAETQAYARITNFFGTKDQIQVQVEIHATEEARKAGWPSIQQQAHYINMEDLEGDLIPAMYGVLKTFTQYVGSEDV
Ga0209596_10040355	F045619	AGGAG	MAFVWTINSLQVMNTPEPQTVVMSNFTIAKDGQQVNYSVNLLPANPDDFTPFDQITQAQALAWTQAALGPERVTNMETEVDFLIAQAAIPTPQPTPLPWN