NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1003262

Scaffold Ga0209596_1003262


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1003262 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12869
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (70.83%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000369Metagenome / Metatranscriptome1222Y
F000376Metagenome / Metatranscriptome1216Y
F023341Metagenome / Metatranscriptome210Y
F038675Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0209596_100326210F000376AGGAMSTYQEKAKECKCCGKHVPLPTVLREYNGTIVCPTTFANILEYKRLWDSYESRPMGSIRKHFSEYVQQIVENSIDKNNDAPL
Ga0209596_100326214F000369AGAAGMTNELEPAAHFDRMNKVVQELLKGNSATQIASITGFTRKEVLEYVDEWKSVVHNDTNLRDRAREAISGADEHYAMLIKEAWKTVEDADTQGQLNVKAGALKLIADIETKRIAMLQSVGVLENTQMASQIAETERKQEVLVGILKEVTAGCPKCKMDVAKRLSQITGIVESVNIHDAEVITNVQ
Ga0209596_100326217F038675N/AMKLYQSKDWLHRRYIVQKKTVTEIGKECRVSAMTIQRYLQEFGLLRKK
Ga0209596_10032622F023341N/AMPVYEYKCSYDDAHATMSMHRSIVDADPGYTCVECESEMIRHFTPFGIQFKGNGFYKTDNPK

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