Scaffold Ga0209596_1001941

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1001941
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17308
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (76.92%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019829	Metagenome	227	Y
F047675	Metagenome	149	Y
F061848	Metagenome	131	N
F063688	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100194114	F061848	AGG	MNFLIAKIFTAVTISLSGLAFAYDAYNAPSALPVTPPVTVSLAPVLSVTTTTVKPLTDCQYALQLARQAGWPLTEMGTVARILYRESACKAKAFNKFDTQGGSYGYYQINGYWCRPNKYWPIGWLQAKGLVTTCTDLFDPVVNTNSALAIWHNSGYGPWALPNP
Ga0209596_100194115	F019829	N/A	MTDYPIPDPGLTERTRQMYTEKYAETFKNFVDEVFRPNYVPAPKPVDHSILLDELAILREKYLAGTPSDEHKFAGAVITAAMAVIIGI
Ga0209596_100194119	F063688	GAGG	MSRYNSNYGSHDQLQDLRKVNMGLHHELDAIKRLLDETTKELQQAQDELTLAIEALVRARDIKP
Ga0209596_100194126	F047675	AGG	MKYEIVSPRIGIPGDNYEPADGVNVDALLAGGFIIQSPTKAPKGAKTKTDTNEE
Ga0209596_10019414	F047675	AGG	MKYEIVSPRIGTPGDNYEPVEGVNVDALLAGGFIIQSPTKAPKGAKTKTDTNEE