Scaffold Ga0209596_1001307

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1001307
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21690
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (93.02%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046858	Metagenome / Metatranscriptome	150	Y
F050167	Metagenome / Metatranscriptome	145	N
F057118	Metagenome / Metatranscriptome	136	Y
F093272	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_10013071	F093272	N/A	EGEIVPYNPYGVSGSIITPPRNVRSAPAWLGSRSKRFSNLEVRDREGNLIVAISDSDAVKLARRVKRHAKPKPLPATLRPLSEIELRNIRAQEKLAELAKKLARPAEQYN
Ga0209596_100130710	F057118	AGG	VEIKQYKITIKTQAELVYYVSEYDIDTAINLAIDAPYKEWEVSEFDMPTGADVIAEEI
Ga0209596_10013073	F046858	AGGAG	MYLELTDTLAIIIALSTSTTLVITTAIKNARLVREIRKLSK
Ga0209596_10013078	F050167	AGG	MNTTTAQVYEDYLASISLTLSDLADELASVQFDVDSANGYEPRGTVVKALPDQIRFKPKSMWVSLGNGKYQHLTGEKGLVAKHSRLDGYTSVVFRP