Scaffold Ga0209596_1001255

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1001255
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22211
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (34.29%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F005024	Metagenome / Metatranscriptome	414	Y
F006107	Metagenome / Metatranscriptome	381	N
F006262	Metagenome / Metatranscriptome	377	Y
F009398	Metagenome / Metatranscriptome	318	N
F010611	Metagenome / Metatranscriptome	301	N
F017997	Metagenome / Metatranscriptome	237	Y
F019637	Metagenome / Metatranscriptome	228	Y
F031459	Metagenome / Metatranscriptome	182	N
F032255	Metagenome / Metatranscriptome	180	N
F038227	Metagenome / Metatranscriptome	166	N
F078377	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_10012551	F019637	N/A	MPNQIQFLVDQFGLANTAWFIRLMKSGTTPEQIVGSLVPSNYDSRRDGVFRALQFAANLPDSMMPEEIKNALQP
Ga0209596_100125510	F038227	N/A	MISIGIALNRLFSGQSGGTDAPVLSRDVLREDEGFLWQEDGTSKLVITLGTFDSLLREDAGFLQQEDLFKLAIQSN
Ga0209596_100125513	F001272	N/A	MEISIKLTQEQVSHLLQLIDIAVKAGGIQNAKVALPLVDIIVEASQPKPE
Ga0209596_100125514	F031459	N/A	MQTDTNNSSGVGISLATAAAAGAVSFLPQLTEWFQLGAAVLAFIAASIGLYKTFKK
Ga0209596_100125516	F017997	N/A	VNFIEQIVTALLKWLTGFIQTPPTIEDAKSDPDLKKKLLDRIAESDR
Ga0209596_100125518	F009398	N/A	MTTIGSSLQQGMAVLQQMLGAPMFIWEGTSIRCIPAAVNDANVPISGGFQDNVTSRILVMFSDWKTCDSTLVSMDSTLYTLDQGTTFSRLQREDAGFVLLENTDRIALTFCKPKPVVGRTLVYQGRTLRILSCRVDASGAYYNLELGAKTK
Ga0209596_100125519	F005024	N/A	MKQYLLSTSRDLHKAINSRFFYLMVRLFVLVPPKSPGQERRRIADYLGTPVGDINRKSKKTGKRVGKSRILRRVHLIAQSKEAKGGRRGLYGEEMKAAASALMRKAIGSVGYLRSGVVKMIRVYNKGFSQFQSAKWKPLSKPPGYKAPKQTNAALLSMANQYGLPQENVATHKGTKARGFQAVPGFNPTASVVMTAGVADSQYNRVAGIYNTAMQKAFDDETTEMVNHMTEALLANGKVLEDNGISIK
Ga0209596_10012552	F010611	N/A	MTQKEYGDRIGISQPRVAQLISQGMPMDSPESADLWRSQHVRSRAKSIPKQKTTPDTTAIEQEGPYRPIEAESPLNTATAATDSPEGAYERQRQIERAAYDLAVDALRGGRADAGRLVAIHAAAAKNLTSARDEVITQAEKERRLVSGDWVRRVMQEHDGAVASLIKAMPKQLSGRIAPHDPEHAERELTRWVQEVALKTLHNTDPWKS
Ga0209596_100125520	F006107	GGA	MNAVALRAELAVSDYLAAANWSASGAGTPTCLTSYSRGLYDDPDDQDVMPNFPRLVVSTNSARPMQRTDLTCEVEIAVELQLSADDTDEAAVLTTVQVLDNLILPLFDDTGASALNAPSNDASGPFTAQFAAPLDFGGSSISNRSRTFTRTFTLYCSATI
Ga0209596_100125521	F032255	N/A	MFDTDNATAVFTALASIESYDLTHEADTEEVRNSAGETVGHIGYNERVTLNLNLIPSGANAAAALAFCSLAPVNGTVGITGAPVIKMMGTADILNTGRFIYAGGGSVKMTQSGKAMVSITVKKFKNLTTAAAVALNV
Ga0209596_100125529	F078377	N/A	MSNIITVQLPTETSYWGSTATEADVYRIIGNLEMMIRSQFPDVDIDFQHMQEPRGRGIFGDDQSLMDSIYQFIQDNWTAAL
Ga0209596_10012555	F006262	N/A	VFTFTVAIKRSYLRSVYSTLGSVTLLAALAAKSIAAATVIESGQVVRSTSSSDVSVEFAEPGKGAPTPSEMVEMWESLVDDYDLAVYYLNQDGITSPTDAQIYTKMVGVVLVAATSFGGDFSNFRREASYRGMS