Basic Information | |
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Taxon OID | 3300027754 Open in IMG/M |
Scaffold ID | Ga0209596_1001078 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 24172 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (77.27%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 8 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000258 | Metagenome / Metatranscriptome | 1443 | Y |
F035307 | Metagenome | 172 | Y |
F056615 | Metagenome / Metatranscriptome | 137 | Y |
F058150 | Metagenome / Metatranscriptome | 135 | Y |
F060898 | Metagenome / Metatranscriptome | 132 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209596_100107815 | F060898 | AGAAG | MPELIQTLKSFKKQKSEDRKFTASLKGINIDIDEEDSQQQGKTFEDIQRRALGIKASGDDIVSLQGSIAAQAGFGIGAGLGYTEE |
Ga0209596_100107818 | F000258 | GGAGG | MTVDYKADIMLDLRKYLWAQLKSNSIFTATDYYSDNIGQEIVPIIPVQQSPEMNQFLSGKKHIVYDKIGLSYEDNWAICCEQILFTIYSTDVSEINEIRNLMTDLFRRMDDSARDANAYSGISSKFKFFSIFVADISPTAPSEELAGFLSSDVILEVKYARHLDTTGRFL |
Ga0209596_100107819 | F035307 | GGA | LVTAASGLQKTMVGTKGAILKDSTVAQISAAIYYQAEVVSKITTNKQFQSRFQSVIFKQLQQDFGLYVDAQARVNPQSLHHVYEWNKVGNSGSRLFKLNVTERNGLSFKLGSTFLMSKSSVPNSFGKRKYVFKNKASVMEAGMPVIISPRAAKRLVFETSTGTVYMPIGASVTVTRPGGGKATGRFQIAYARFFTGNLVNLSIKRSGFQQIFNSSLTKAMRLPSDVKKVKYSFSANTLNMQAESAIASAFGGV |
Ga0209596_100107820 | F056615 | N/A | MYDLVDSVMPMFIDIYKQFDLQDADTGSIKKEWQFDRTVPCSAKGIISNSSSSRTGDKQIISNKYANDQILQIRTSDKITLREKITNIRDAEGTVVWEELNFPSNTPTVYELMGITPMTDPFGAVIGYNSTVKRSENQTIGQ |
Ga0209596_100107821 | F058150 | N/A | MEILVGSNSPVTHKVFWQGQLTDSDSLPVVRLYDITEDPAISPPINPGTILATLTAVKSEVDAGTYVVYIPVSYTTRQRQLRLNWSYTVGSVSTEKSHKIYVQTPYTDLSQAIDSLGLGSDFSDPNSKSYFELCSAERYARKLIEAYTQQQFYLYDDVQIAYGSGSDVLPLPYKLAELHELYQNDILLLNTLTNVNNWNYNTIISESGFGIRINRANMLDNTVYTANGMVPPPTNDVWNGVFKQGVTYRVQGRFGWEEVPDEVDLACIELMKDYFSKDKVWRNKYMKSIQTFDWKFEYNSGTYSGTGNLYADQLLLPYVINKMVVI |
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