Scaffold Ga0209596_1001078

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1001078
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24172
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (77.27%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F035307	Metagenome	172	Y
F056615	Metagenome / Metatranscriptome	137	Y
F058150	Metagenome / Metatranscriptome	135	Y
F060898	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100107815	F060898	AGAAG	MPELIQTLKSFKKQKSEDRKFTASLKGINIDIDEEDSQQQGKTFEDIQRRALGIKASGDDIVSLQGSIAAQAGFGIGAGLGYTEE
Ga0209596_100107818	F000258	GGAGG	MTVDYKADIMLDLRKYLWAQLKSNSIFTATDYYSDNIGQEIVPIIPVQQSPEMNQFLSGKKHIVYDKIGLSYEDNWAICCEQILFTIYSTDVSEINEIRNLMTDLFRRMDDSARDANAYSGISSKFKFFSIFVADISPTAPSEELAGFLSSDVILEVKYARHLDTTGRFL
Ga0209596_100107819	F035307	GGA	LVTAASGLQKTMVGTKGAILKDSTVAQISAAIYYQAEVVSKITTNKQFQSRFQSVIFKQLQQDFGLYVDAQARVNPQSLHHVYEWNKVGNSGSRLFKLNVTERNGLSFKLGSTFLMSKSSVPNSFGKRKYVFKNKASVMEAGMPVIISPRAAKRLVFETSTGTVYMPIGASVTVTRPGGGKATGRFQIAYARFFTGNLVNLSIKRSGFQQIFNSSLTKAMRLPSDVKKVKYSFSANTLNMQAESAIASAFGGV
Ga0209596_100107820	F056615	N/A	MYDLVDSVMPMFIDIYKQFDLQDADTGSIKKEWQFDRTVPCSAKGIISNSSSSRTGDKQIISNKYANDQILQIRTSDKITLREKITNIRDAEGTVVWEELNFPSNTPTVYELMGITPMTDPFGAVIGYNSTVKRSENQTIGQ
Ga0209596_100107821	F058150	N/A	MEILVGSNSPVTHKVFWQGQLTDSDSLPVVRLYDITEDPAISPPINPGTILATLTAVKSEVDAGTYVVYIPVSYTTRQRQLRLNWSYTVGSVSTEKSHKIYVQTPYTDLSQAIDSLGLGSDFSDPNSKSYFELCSAERYARKLIEAYTQQQFYLYDDVQIAYGSGSDVLPLPYKLAELHELYQNDILLLNTLTNVNNWNYNTIISESGFGIRINRANMLDNTVYTANGMVPPPTNDVWNGVFKQGVTYRVQGRFGWEEVPDEVDLACIELMKDYFSKDKVWRNKYMKSIQTFDWKFEYNSGTYSGTGNLYADQLLLPYVINKMVVI