Scaffold Ga0209596_1000659

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1000659
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31769
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (97.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000332	Metagenome / Metatranscriptome	1283	Y
F022373	Metagenome	214	Y
F046865	Metagenome	150	Y
F090062	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100065918	F046865	GGAG	MIIKQLDPVSNQIRNNTLEEVAKEFDGMKNGGDTTASFASYVRSMKK
Ga0209596_100065924	F022373	AGGAG	MQQKVILEFTYPDDEDSLLFAIKGPEMYRALTNIKMAVTGSFQTKADLNAVLDRVQDLTDQIFEELGE
Ga0209596_100065925	F090062	GGAG	MLTTEQLRRKARQIYNNDLAPEHTNRHNQRKWVRAVLRLGDHWLTAKPLRRLDATEGNT
Ga0209596_10006593	F000332	GGAG	MRWLILLLLLGLVGAVAKSGCHVREFYGIAYTVHDPTLRHREMVAWLDKNAPYCKTTDYVVIWNNLGEWAGTADSPKIRELVIHGYKEAQEREKK