Scaffold Ga0209596_1000655

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1000655
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31918
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (61.22%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008938	Metagenome	325	Y
F012113	Metagenome / Metatranscriptome	283	Y
F025225	Metagenome	202	Y
F029043	Metagenome	189	Y
F048161	Metagenome	148	N
F049401	Metagenome	146	N
F074409	Metagenome	119	N
F086801	Metagenome	110	N
F086811	Metagenome	110	N
F088509	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100065510	F074409	N/A	MNNTQMISPKPARPVPCAVSVYGKEYRNHIHQPKANGWRFLFDQSTGLVMNRHGVKAKNAELVLERLKGVEINARYIDGEIMGMRTKAAKGTIILIDAFDPANPKPIAERLKLIEEIEPASYEVKANALLRMPRFDHDKLKACWAEMDYQNQKAGEVLWEGFVSKDDQKYPWISNPSYCSPEWHKTRIRW
Ga0209596_100065513	F086801	N/A	MTGVKVVASNEFTEKHAYHLSQIQLATIEAIEIKYRKGQAQHGEAGPLWTMPTIRVTENAIEESIDQVTYLMTLRGQIKIILELARLGMEDQDLCATTARSSCKQIFDMMGGIK
Ga0209596_100065515	F049401	GGTGG	VLRQGRKEMMQRLNIAAGFVMLILIIGGGLVLSSCASTSYTYTAPSPADIPELIMEWDRLERTIGLVKPEFREQYAKALKALSNAIAEQERWRARAENK
Ga0209596_100065516	F012113	N/A	MQQILTFIQSQDVFAWVGALVALLSAVIAIASLIPGDEPEATLTKIVSFLSKFSKK
Ga0209596_100065522	F025225	GAG	MITIDLLNQAQFAHKLQQYQSVSRKNMADVINSKLGDVAITAIGTTYRSNSAQIASELERIVSSVKTKGIYKPIGVGKNGKIIKRKIGETKKFFARNESYAGTYKLVNWLLKNRGLATLGKTKIGVGGLGMGGKPTTIGHLARRLVAGRKRSVNYIRNGWAAAASVFGKKASLTRGDYSKQAIMRLGGGTKADNKKALMEGIIFNRAGDKDTRFYPVRKRAISGAVKIGGPGLAEAVQKVMKDMNVYLGRKNKESSDKIGL
Ga0209596_100065528	F029043	N/A	MSKDEQAIKALQYLLDEGFISLGYIDGQPSVFLTTSLADAQKAILGLAKDSADWWK
Ga0209596_100065532	F086811	N/A	MTSPQFKVEDALASLLTPVSGLNVYTTNRTGLRLFPYASINASIGSQQIVPYSGVFEISVELNYSDSTARTTQSVFDDTYYSIFSALYSDNNTLVTKVQDNVTDLKIFMGRITSQSPSIRASKRAWQRGLTLSFIVTPDANADGLRDYDFSDALNSFYLPTI
Ga0209596_100065533	F088509	N/A	MTSIERQLENGMATALSSTGLNIFKRDTEGLRLLPSLVVESSISSEEIIPYSGVFKCPISVTYSTRADTTTRAAFDSKFQEILQVMYQSPNLASVLTTATLKVFIANVVSESPAVLSANRTWSKTISLETTCTSL
Ga0209596_100065547	F048161	AGGAG	MILALKIAVGIVLAVVILNVAFWGFIILAYLIVTFFECIGKWINK
Ga0209596_100065548	F008938	AGG	MVKRGMPLTSESDAQRWRLANQTRVSTARSILPKSLPSSEPQKELDASSFRLVNSLGRLERSKKIEVAAYDLVVKAKNAENPVAMRSAINGWGEAKKRVSEAEMEHARYEETTRQTIRMDEVREFITTWFGAIRNLMDAMPSSLSARANPSDPECAKVAIQEGVDQIFITIQKAEGEFK