Scaffold Ga0209596_1000592

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1000592
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33413
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (80.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015860	Metagenome	251	Y
F036215	Metagenome	170	Y
F058955	Metagenome / Metatranscriptome	134	Y
F095419	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100059219	F058955	AGGA	LRGAGNVPMVQAQEQQVDYIGPRVAAQGASQLSQILDRMSANAFQTAAGMRQQEGLQFAAQNPLTSEQVRYAKEGVNPEGWFMGPDGQSAQIPTTNAAGFFGQAVAKARSLELSGHFEIEGRNELVKLLSDVEAGRATSAQVGDKIKTMSDGYSKSLANIDPEASIKFRATMATHGNTVLNAAYKAELDRAKAQNIAKFDSDFDNSTRLLEQTISQGSWTDANGQQRSIDELADVFRKNVLTQSLLIGDKALQMEYSTKFETALRTAKINAVTKALITDANMMDPELTLKKLRGGDLGNMSPVLQQMIVNDFDAVAKVTANYMVAVNNRKSIADAKIADTKRAGEADAINLLEQIFPLPDTSPKRKQLIAQLTALPPGSVPIGTLKDLLAPSGEGNPAVNFNLLSGIYNNTITRPDQIWGLVGKGITGKDAVTALKLLQSEDRRDSSMLDRGISQLAGIPVIPGSVVVIDPKGEEFKRRTKLQSEALQIQAVAAAEGKTLTPRQILTQLEDNIAKTRNTESAKAARKSLEVYEKSDWVNGPITNDSLPALERKAGTDKKKLQELNRIKQLLRQANGEQ
Ga0209596_100059238	F095419	AGGAG	MQDDREIKPSEGKAWKNADKTETWHGDYKGTFVMPDGTKHFLDVYVNKKPDGGVWFKLKVGKPKMAAAAVPEYGAAVAQPSPKAVVPDLDDDIPF
Ga0209596_100059240	F036215	AGGA	VSSVDELACHSCGKVHPDAKLITLPDGTSVGSYSEAYRAYTEAKWVFEVLPVTVNTRRKKTPQISRRDYILAVQDRRGHVAANALADIVRQLWKASK
Ga0209596_100059241	F015860	GGAG	MHISYVKLYRDDEGTVRDTQEANGEFRNLHYQIDLLKQALEREMNTVTDLHELLNSVRRIAFELNEEILKDTHAKTQE