NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1000461

Scaffold Ga0209596_1000461


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1000461 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37517
Total Scaffold Genes65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (73.85%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Associated Families10

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001848Metagenome / Metatranscriptome626Y
F002037Metagenome / Metatranscriptome600Y
F003066Metagenome / Metatranscriptome509Y
F003522Metagenome481Y
F004547Metagenome433Y
F004950Metagenome417Y
F007861Metagenome / Metatranscriptome343Y
F011921Metagenome / Metatranscriptome285Y
F026510Metagenome / Metatranscriptome197N
F093530Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0209596_100046115F007861AGGAMADKSLEEVKRGEQASKILDNPIYKEAMDKVRESLIASMANSPLGDEKTHNRLVIALQLLNQINKQLTDVMQTGKLAAIQTDRPKFKIFG
Ga0209596_100046118F026510N/AMIGGVNSPSIIFTMPILFDHNSVTGVSQYFDYDPAKDTYYLTSTQDISGMLDNIKKSRDNPEIWNKGVKQEWAHFASIPPVVEMQLKQKGIDMYNPNQTKELIKEINENYPYLKLTTKRG
Ga0209596_10004613F004950AGGAGMGKGSGRRPLLISEQEAQDNWDKIFKKKKNSDDVSPHTYEYELNKSIGDVEKRFIDGTSKPNESQFNGN
Ga0209596_100046130F001848GGAVILHYIPKDQLRQHWDYVKHGLELVRAKGHTQWIVEDVYCDCYENRSMLFIGQRNIDISTNASELVGFVVLQPIGDTLHVWATWSTLNDKTLFQQAFQEIQAIAKQGGKSRVTFSSQRKGWERKARLMGFIPQTWEYKL
Ga0209596_100046137F004547GGAVKVLAYFTVLVVFWLFLIDAPYAKELVKEMSMATESGEIVLTSEECIFTKMGLQGYDYAAYATDKGHPNHEGCWKSDNYEGKHAVYIYFPEINQTAVFDAKLFKPKATI
Ga0209596_100046144F093530N/AMRNAYASHTDFGFLRGVILDNPKAMPSNIDMVFERRGNFLIGEWKREDEDISLGQKILLKALADQDKFTVLMIYGYSDDTGTEVNNFYKVTQNKLVIIGNGIEGLKDYIDAWYQSSNGVSSP
Ga0209596_100046145F002037AGGMSKIYWIFIVVLAALAIWGTEQVMAQTTTILAPDGSVTVCQVGSNGIVICV
Ga0209596_10004615F003522N/AMSNKDKIIAYLTEPKTIKAIAEHVDANYHTIKNLLVAMKMEGDVHSFKDNDNRLMHYYIPQPHPLQAIFGHTANFTDDQIKSITIHNADDSKHNLQHNTTRETFGESITYTLGKYD
Ga0209596_100046150F003066AGGAMKKEPLAFLYEEFDIKSGDLKKSYLWSFHPNQLSYLNDLKNTTHHIKITPLFPGEPVEEYKGLSKYDSKRLVEANNGL
Ga0209596_100046155F011921N/AMAIPFCILGVYNMANGLEQIADILKRLNDELKLDNDKWERANVTTTTLRPSNDGTTSTRITTGEKDEL

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