Scaffold Ga0209596_1000461

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1000461
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37517
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (73.85%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001848	Metagenome / Metatranscriptome	626	Y
F002037	Metagenome / Metatranscriptome	600	Y
F003066	Metagenome / Metatranscriptome	509	Y
F003522	Metagenome	481	Y
F004547	Metagenome	433	Y
F004950	Metagenome	417	Y
F007861	Metagenome / Metatranscriptome	343	Y
F011921	Metagenome / Metatranscriptome	285	Y
F026510	Metagenome / Metatranscriptome	197	N
F093530	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100046115	F007861	AGGA	MADKSLEEVKRGEQASKILDNPIYKEAMDKVRESLIASMANSPLGDEKTHNRLVIALQLLNQINKQLTDVMQTGKLAAIQTDRPKFKIFG
Ga0209596_100046118	F026510	N/A	MIGGVNSPSIIFTMPILFDHNSVTGVSQYFDYDPAKDTYYLTSTQDISGMLDNIKKSRDNPEIWNKGVKQEWAHFASIPPVVEMQLKQKGIDMYNPNQTKELIKEINENYPYLKLTTKRG
Ga0209596_10004613	F004950	AGGAG	MGKGSGRRPLLISEQEAQDNWDKIFKKKKNSDDVSPHTYEYELNKSIGDVEKRFIDGTSKPNESQFNGN
Ga0209596_100046130	F001848	GGA	VILHYIPKDQLRQHWDYVKHGLELVRAKGHTQWIVEDVYCDCYENRSMLFIGQRNIDISTNASELVGFVVLQPIGDTLHVWATWSTLNDKTLFQQAFQEIQAIAKQGGKSRVTFSSQRKGWERKARLMGFIPQTWEYKL
Ga0209596_100046137	F004547	GGA	VKVLAYFTVLVVFWLFLIDAPYAKELVKEMSMATESGEIVLTSEECIFTKMGLQGYDYAAYATDKGHPNHEGCWKSDNYEGKHAVYIYFPEINQTAVFDAKLFKPKATI
Ga0209596_100046144	F093530	N/A	MRNAYASHTDFGFLRGVILDNPKAMPSNIDMVFERRGNFLIGEWKREDEDISLGQKILLKALADQDKFTVLMIYGYSDDTGTEVNNFYKVTQNKLVIIGNGIEGLKDYIDAWYQSSNGVSSP
Ga0209596_100046145	F002037	AGG	MSKIYWIFIVVLAALAIWGTEQVMAQTTTILAPDGSVTVCQVGSNGIVICV
Ga0209596_10004615	F003522	N/A	MSNKDKIIAYLTEPKTIKAIAEHVDANYHTIKNLLVAMKMEGDVHSFKDNDNRLMHYYIPQPHPLQAIFGHTANFTDDQIKSITIHNADDSKHNLQHNTTRETFGESITYTLGKYD
Ga0209596_100046150	F003066	AGGA	MKKEPLAFLYEEFDIKSGDLKKSYLWSFHPNQLSYLNDLKNTTHHIKITPLFPGEPVEEYKGLSKYDSKRLVEANNGL
Ga0209596_100046155	F011921	N/A	MAIPFCILGVYNMANGLEQIADILKRLNDELKLDNDKWERANVTTTTLRPSNDGTTSTRITTGEKDEL