Basic Information | |
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Taxon OID | 3300027754 Open in IMG/M |
Scaffold ID | Ga0209596_1000461 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 37517 |
Total Scaffold Genes | 65 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 48 (73.85%) |
Novel Protein Genes | 10 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (60.00%) |
Associated Families | 10 |
Taxonomy | |
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All Organisms → Viruses | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 8 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F001848 | Metagenome / Metatranscriptome | 626 | Y |
F002037 | Metagenome / Metatranscriptome | 600 | Y |
F003066 | Metagenome / Metatranscriptome | 509 | Y |
F003522 | Metagenome | 481 | Y |
F004547 | Metagenome | 433 | Y |
F004950 | Metagenome | 417 | Y |
F007861 | Metagenome / Metatranscriptome | 343 | Y |
F011921 | Metagenome / Metatranscriptome | 285 | Y |
F026510 | Metagenome / Metatranscriptome | 197 | N |
F093530 | Metagenome | 106 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209596_100046115 | F007861 | AGGA | MADKSLEEVKRGEQASKILDNPIYKEAMDKVRESLIASMANSPLGDEKTHNRLVIALQLLNQINKQLTDVMQTGKLAAIQTDRPKFKIFG |
Ga0209596_100046118 | F026510 | N/A | MIGGVNSPSIIFTMPILFDHNSVTGVSQYFDYDPAKDTYYLTSTQDISGMLDNIKKSRDNPEIWNKGVKQEWAHFASIPPVVEMQLKQKGIDMYNPNQTKELIKEINENYPYLKLTTKRG |
Ga0209596_10004613 | F004950 | AGGAG | MGKGSGRRPLLISEQEAQDNWDKIFKKKKNSDDVSPHTYEYELNKSIGDVEKRFIDGTSKPNESQFNGN |
Ga0209596_100046130 | F001848 | GGA | VILHYIPKDQLRQHWDYVKHGLELVRAKGHTQWIVEDVYCDCYENRSMLFIGQRNIDISTNASELVGFVVLQPIGDTLHVWATWSTLNDKTLFQQAFQEIQAIAKQGGKSRVTFSSQRKGWERKARLMGFIPQTWEYKL |
Ga0209596_100046137 | F004547 | GGA | VKVLAYFTVLVVFWLFLIDAPYAKELVKEMSMATESGEIVLTSEECIFTKMGLQGYDYAAYATDKGHPNHEGCWKSDNYEGKHAVYIYFPEINQTAVFDAKLFKPKATI |
Ga0209596_100046144 | F093530 | N/A | MRNAYASHTDFGFLRGVILDNPKAMPSNIDMVFERRGNFLIGEWKREDEDISLGQKILLKALADQDKFTVLMIYGYSDDTGTEVNNFYKVTQNKLVIIGNGIEGLKDYIDAWYQSSNGVSSP |
Ga0209596_100046145 | F002037 | AGG | MSKIYWIFIVVLAALAIWGTEQVMAQTTTILAPDGSVTVCQVGSNGIVICV |
Ga0209596_10004615 | F003522 | N/A | MSNKDKIIAYLTEPKTIKAIAEHVDANYHTIKNLLVAMKMEGDVHSFKDNDNRLMHYYIPQPHPLQAIFGHTANFTDDQIKSITIHNADDSKHNLQHNTTRETFGESITYTLGKYD |
Ga0209596_100046150 | F003066 | AGGA | MKKEPLAFLYEEFDIKSGDLKKSYLWSFHPNQLSYLNDLKNTTHHIKITPLFPGEPVEEYKGLSKYDSKRLVEANNGL |
Ga0209596_100046155 | F011921 | N/A | MAIPFCILGVYNMANGLEQIADILKRLNDELKLDNDKWERANVTTTTLRPSNDGTTSTRITTGEKDEL |
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