NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1000367

Scaffold Ga0209596_1000367


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1000367 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42220
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (38.10%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002227Metagenome580Y
F004664Metagenome / Metatranscriptome428N
F005388Metagenome / Metatranscriptome402N
F005740Metagenome / Metatranscriptome391N
F007361Metagenome / Metatranscriptome352N
F012111Metagenome283N
F094803Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0209596_100036710F012111N/AMSERAPKRYTDGSVTFEGGVDSGVMPSEVDRNQVAFAVNASFRQGFVSPRPGFIQKDMVICDSITADNATITADITNITADGYSEECYNPSGLTGILQCALPYIADNGRTFILMLISGKVWLYDIDQNSVQNISTSSSLYNPSNILDGWMVQAENFVIIQDGVSGPLIFDGVAIRRANIDEIKCGRMMAYVNGRIWYALENGFSFRATDIVYGDGTRASVLKETENTFLNSGGDFAVPSDSGGITAMCIPGNPDTSLGQGPLLIFTPRYVFSINAPVDRDIWKNLNYPIQAISLLTNGALGSRSAITVNGDVFYRSVDGVRSFIIARRSFNDWGNTPISNEVLNITDNDQTNLLWASSAVVFDNRLLMTAQPRYNSEGVIHKALLVLDFDLITSMRKKFPPAWAGIWTGLDVLQVLKSENAYGDRCFVLARGADGSIQFWEISKSEKADNSVANGPSPIEWLVQTRSYNFEIPFGLKRLDSGDIFIDALDGTAAFNVQYRPDQYPGWIDWANWSECSTTNQCSNLCPIANFKPQYRPKMRLPTPEDTSCNSTISTPTRNLYEVQMALTITGFCRIKSIRVHAYDVQESVVGECRTFQGCKTLEGCDVNPFNYTSE
Ga0209596_100036712F005740GAGMKLIVQDIQSTIARVVGVCIDDPRVYDYINQACRRLLHKGLWAGAYGRFTINTVGGCITWPRQIETIEAVADCCGVGTVRNQWFEFQESGYGLLGENSACAGKQLVDRGTVVSYRDMSGGLNSYIRVYPGDASDVGKTITLQGVDQNGQWIRTLSGSVWIDGEKLILALPYVQSTKKFTSLTGVIREATNTASRLYEYNATTLLELDLAVYDPDEMLPQYRRSYLADRCSSDDSKPVTVMAKMRHVNATGVNDYLIPPSPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVHTIRMVGVGLNGGGFSQWF
Ga0209596_100036714F007361N/AMKGKLFQICGLPRFGSAFMSVLFSLENDCLGIHEQGATDPNWKQSIEGYRLIHKYVADCSTYGYLPKAVVDDSIKVYVKKDAKSSSKECTERFGYEVHLQSFESIREYADQWACSNDVMVIEEGELFKLDTLRRIWIHCFKDERPFPEEKATRLLTMNIQRHEPEKVFSVENGNRFVKEV
Ga0209596_100036742F002227N/AMKLTIQSTQNAQTIVDLFNAIITGNEAEGATPLSIYDEDKHICSLIGKSGEQILELIIERESGDKLQEVGHPAPSPKSL
Ga0209596_100036757F094803AGGMLRGMASLAGHWNEIRARYLAGEELSAIADDLKLVRMSVAARASRAGLPEIRRQMQSVCKEKKIESLESLSALVRSKLAADAISTIKRVDTYDLDGIKDESTREQILGSVAKRSALVFGWSDQSEASSISINLLGSMPDRMDNITLSNKTIEADTIE
Ga0209596_100036758F005388AGGAMACPNVFNAFAVATESLAQDVYKRASYRSMWLNLIERGEYPQGTGLIQTSFTTTSIEPTAAETWAAITLADGAGTNACDVTYNDVPVGYNAVTWGPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNIFAKYAIKAIADSSFTQTETIPAGVNEFPWIDGVSSGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAFRSDLNIADTGSGEGSTLLKRIGANRVIKNFRHVPNLFPPRFSYSGGKYTLVQPFTSASGTKGTVFSVNPTWTTAAYEGAFIVTPYVFKSHIVRPVNRVGDLAWMPTNYMGEWQWVTGAYKLSVDCADPLDKKGQHYAEFMHAPEPIFTNQGMTIIFRRCTGALTQIICS
Ga0209596_10003677F004664N/AMVIPGGWHYRVPETGIEIAGGSWPQLHEFIKNHYNANAIQIPGNLDDLIVEYACRNGADCTYDEVELSKPAGRKSLEIGDVIRFSMSLLHGLTIGGGKVGQEEANRRASICAGCRFNRKPLGCTGCNARVLKDAVKTFSQHGSTPVDEQLQSCEFCGCFIRSLVWFPIETLYKFADSTENENLPDHCWKKRPCTAT

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