Scaffold Ga0209596_1000367

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1000367
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42220
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (38.10%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002227	Metagenome	580	Y
F004664	Metagenome / Metatranscriptome	428	N
F005388	Metagenome / Metatranscriptome	402	N
F005740	Metagenome / Metatranscriptome	391	N
F007361	Metagenome / Metatranscriptome	352	N
F012111	Metagenome	283	N
F094803	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100036710	F012111	N/A	MSERAPKRYTDGSVTFEGGVDSGVMPSEVDRNQVAFAVNASFRQGFVSPRPGFIQKDMVICDSITADNATITADITNITADGYSEECYNPSGLTGILQCALPYIADNGRTFILMLISGKVWLYDIDQNSVQNISTSSSLYNPSNILDGWMVQAENFVIIQDGVSGPLIFDGVAIRRANIDEIKCGRMMAYVNGRIWYALENGFSFRATDIVYGDGTRASVLKETENTFLNSGGDFAVPSDSGGITAMCIPGNPDTSLGQGPLLIFTPRYVFSINAPVDRDIWKNLNYPIQAISLLTNGALGSRSAITVNGDVFYRSVDGVRSFIIARRSFNDWGNTPISNEVLNITDNDQTNLLWASSAVVFDNRLLMTAQPRYNSEGVIHKALLVLDFDLITSMRKKFPPAWAGIWTGLDVLQVLKSENAYGDRCFVLARGADGSIQFWEISKSEKADNSVANGPSPIEWLVQTRSYNFEIPFGLKRLDSGDIFIDALDGTAAFNVQYRPDQYPGWIDWANWSECSTTNQCSNLCPIANFKPQYRPKMRLPTPEDTSCNSTISTPTRNLYEVQMALTITGFCRIKSIRVHAYDVQESVVGECRTFQGCKTLEGCDVNPFNYTSE
Ga0209596_100036712	F005740	GAG	MKLIVQDIQSTIARVVGVCIDDPRVYDYINQACRRLLHKGLWAGAYGRFTINTVGGCITWPRQIETIEAVADCCGVGTVRNQWFEFQESGYGLLGENSACAGKQLVDRGTVVSYRDMSGGLNSYIRVYPGDASDVGKTITLQGVDQNGQWIRTLSGSVWIDGEKLILALPYVQSTKKFTSLTGVIREATNTASRLYEYNATTLLELDLAVYDPDEMLPQYRRSYLADRCSSDDSKPVTVMAKMRHVNATGVNDYLIPPSPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVHTIRMVGVGLNGGGFSQWF
Ga0209596_100036714	F007361	N/A	MKGKLFQICGLPRFGSAFMSVLFSLENDCLGIHEQGATDPNWKQSIEGYRLIHKYVADCSTYGYLPKAVVDDSIKVYVKKDAKSSSKECTERFGYEVHLQSFESIREYADQWACSNDVMVIEEGELFKLDTLRRIWIHCFKDERPFPEEKATRLLTMNIQRHEPEKVFSVENGNRFVKEV
Ga0209596_100036742	F002227	N/A	MKLTIQSTQNAQTIVDLFNAIITGNEAEGATPLSIYDEDKHICSLIGKSGEQILELIIERESGDKLQEVGHPAPSPKSL
Ga0209596_100036757	F094803	AGG	MLRGMASLAGHWNEIRARYLAGEELSAIADDLKLVRMSVAARASRAGLPEIRRQMQSVCKEKKIESLESLSALVRSKLAADAISTIKRVDTYDLDGIKDESTREQILGSVAKRSALVFGWSDQSEASSISINLLGSMPDRMDNITLSNKTIEADTIE
Ga0209596_100036758	F005388	AGGA	MACPNVFNAFAVATESLAQDVYKRASYRSMWLNLIERGEYPQGTGLIQTSFTTTSIEPTAAETWAAITLADGAGTNACDVTYNDVPVGYNAVTWGPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNIFAKYAIKAIADSSFTQTETIPAGVNEFPWIDGVSSGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAFRSDLNIADTGSGEGSTLLKRIGANRVIKNFRHVPNLFPPRFSYSGGKYTLVQPFTSASGTKGTVFSVNPTWTTAAYEGAFIVTPYVFKSHIVRPVNRVGDLAWMPTNYMGEWQWVTGAYKLSVDCADPLDKKGQHYAEFMHAPEPIFTNQGMTIIFRRCTGALTQIICS
Ga0209596_10003677	F004664	N/A	MVIPGGWHYRVPETGIEIAGGSWPQLHEFIKNHYNANAIQIPGNLDDLIVEYACRNGADCTYDEVELSKPAGRKSLEIGDVIRFSMSLLHGLTIGGGKVGQEEANRRASICAGCRFNRKPLGCTGCNARVLKDAVKTFSQHGSTPVDEQLQSCEFCGCFIRSLVWFPIETLYKFADSTENENLPDHCWKKRPCTAT