Scaffold Ga0209596_1000325

Overview

Basic Information

• Taxon OID: 3300027754
• Scaffold ID: Ga0209596_1000325
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44948
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (37.50%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001259	Metagenome / Metatranscriptome	735	Y
F001272	Metagenome / Metatranscriptome	733	Y
F028149	Metagenome / Metatranscriptome	192	N
F034904	Metagenome / Metatranscriptome	173	N
F042808	Metagenome / Metatranscriptome	157	N
F054609	Metagenome / Metatranscriptome	139	N
F078232	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_10003252	F001259	AGGAG	MRDCAFIYIHAFNGLIRVESLDTAKFIDGNPEWKHVATINPHVVLEQILRATIKDRNLIIKHLLA
Ga0209596_100032527	F028149	AGGAG	MASGNVISCKQFQSFLVSQEPVYDKEILKDIRPFDGLIGYYNTGSFDAYSGTTHTFDRFNSVFPNVTGAWENPTGAACTGTPCDTEENKIGWGFTRNTYSLEKQAWGSDLLCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAMELSGYNVISNTQPGAFACKAGLPAIAFSWVGTGYSVLRVTDTAAAAITAASLGLLTPDILRSRVTRQYFLGAVQAGKDGYDSLQLHTDKETFRYLSKDNPLLVSSWRFGEFAPAAKEFYKYGFMGFVGDFMVKVLQFPLRFVSTATAGNYRLVLPYRNVTATEGIRSEFNPDYNNAQYQISYINNPRALRVLPFRPEAVNPNMPFLVRDYGGRWKFATNDLGADCAGKPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVQGACPVIVTGCAADPGDSEQNYNSADPVCPRVIQFTAVADDATNYVIGTTGIMCDDNIVTNAGISVATVALLVTALQARWDTEFGAGAATWSVVSGNLIQVSGTICNSVTLEFSI
Ga0209596_100032529	F078232	AGGAGG	MPVLTPQELADTGGCFDCMLPVLQQTMLLSLLQQIQVASTDAARVTTSPGGLLTATATAAANPGRRRFVIQNQKTTEHLHLKFGTGCTTTDYHYVLLSAATAGAGATSLTFEGYTGAISVAPVAGSPSYTFAEFV
Ga0209596_100032532	F001272	N/A	MIKIELSTDQVNSLLQLIDIAVKAGGVANARAALPLVDLIVAAAQPKSE
Ga0209596_100032543	F042808	N/A	MVAEKNRIVDGLLTAEGGVDSGFSPSLIQPNQLAWAVNTTVRGGFPKARPGIWTKLLKFSDPTVLYNGGYYNAAVQAAFKEGFFQGCGTYISDNEDPYIFASIGGKVFQIDINAGFSVTDITPINFQFQIQTRGRVSNVATYVCGAPHGLSPGMVVRMPEPPGASFPSGFFGDFLVQTTPSLTTFTTYSPGVDAGPLLGPNFNAYQLATNNPQVTHVYFQQAENWLIIQDTQNQPYLFNGSTLRRATGEEVPTGGPMAYGKGRLWVASGSEYYGGDLVYGDPAYGRDSVIRFTENTFINEGGAFAVSSGPITGLAFAANLDTSLGDGDLLVFTPTATYAFNAPVDRDIWKDLNYPIQRFALLNFGSFNHESIVPVNGDLFFRAQDGIRSLIYARRDFTEFGNTPISRQVTRAIAYDTEFYLTASSSVNFDNRLLMTIQPQKVNNRGIVHRGVVVMDFDLVSGMGRKLPPAWEGVWTGVDVFQMLTIRIQKQDRCFMFGLNQGDIGLFEVTKNGQFDFDGYDDVPIDWTIETRSLTFGEPTNKKRLVSAEQWYDQVMGNIEAKVYFKANEGECWQPWAEIKDCAKYRNCEPGEISCPPAVINCQEVKYYQPPARSRIALPQPPDKCDVQTGGFTRDGYEFQLRYVNTGRFRLKRVAMVAQRLQEDIYGDLSRVACPLLSE
Ga0209596_100032546	F034904	N/A	MRKTLAQAKNSTIPQAVGLATCDERFLQLLNEAQARLADMGKWWGTYKKLRVCVTAGCITWPREVKTIEAMNLCGYNIPIQNQWYEFQTDTRAPRTGCGREGCEQDQLLDRGMVTQFRDSVGNCYIRVTPQLSADAGKRVLLQGLDPNGIPIRTLDSVTGEYVWGEYVTLPNPSITAYVRTSNRFKQPGLTGAQKPLTQGSLTIIAENDTTGLLTQVAVWGPSEQNPEYRRTYLIGMPEVCGGANSCSTTQDNCCIDNGDGCVPADETCTNTVVEAIVRLDFIPAIVDSDWLFIGNLQAIKHMMKAIQKEDRNQYTEAEREIQLALRSLRNELEAYSPNERSVINVQPFGSAKIQYRFGGFI
Ga0209596_100032554	F054609	N/A	MNSLISNAVARGWISFPHPAAVTAHPDVVRAQINSPNYNAQRAWKLWEEGQSLAYVAKAVGVKKRCVMAIIEEGKSKAKEAK